Bioconductor Error

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error lazy R biomaRt table

updated 6 weeks ago by juo5 • 0 • written 6 months ago by Abhishek ▴ 10

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1.2k

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error SingleCell annotate

updated 5 months ago by yw24418 • 0 • written 14 months ago by sandra.garces.19 • 0

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480

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customProDB easyrun error mm10 Mus_musculus_Data

updated 12 months ago by James W. MacDonald 65k • written 12 months ago by Esraa • 0

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634

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Config DiffBind Error

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by jason.kost • 0

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3.4k

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deseq2 differential expression error

updated 10 months ago by snow34 • 0 • written 6.6 years ago by ap3637 • 0

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284

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proActiv error estimateSizeFactorsForMatrix

6 months ago Chris • 0

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1.6k

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error RStudio ggplot2 DESeq2

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by BioES • 0

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409

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TCGAbiolinks error GDC_prepare

6 months ago leon • 0

8 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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