Showing : annotate • reset
0
votes
1
reply
55
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 2 days ago by ▴ 720 • written 2 days ago by • 0
0
votes
2
replies
305
views
annotate peaks using a custom genome
ChIPSeq annotate ChIPpeakAnno
updated 5 months ago by ▴ 70 • written 5 months ago by ▴ 140
0
votes
7
replies
630
views
fail to annotate chromosome data to single cell object
error SingleCell annotate
6 months ago sandra.garces.19 • 0
4
votes
3
replies
849
views
SingleCellExperiment: Edit cluster IDs in colLabels
scran Clustering SingleCellExperiment annotate cluster
updated 13 months ago by 63k • written 13 months ago by ▴ 10
0
votes
0
replies
463
views
Problem with "TxDb.Mmusculus.UCSC.mm39.refGene" to annotate genes with ChIPseeker
TxDb.Mmusculus.UCSC.mm39.refGene ChIPseeker annotate
15 months ago Palmira • 0
1
vote
2
replies
2.0k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 2.2 years ago by 63k • written 2.2 years ago by • 0
2
votes
1
reply
491
views
The best pacakge to annotate a set of regions
annotate
updated 2.9 years ago by 63k • written 2.9 years ago by ▴ 20
0
votes
4
replies
1.0k
views
Annotating a sequence, new to bioconductor
annotate
updated 5.0 years ago by 63k • written 5.0 years ago by • 0
0
votes
3
replies
958
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
5.6 years ago dusan.petrovic • 0
0
votes
1
reply
1.0k
views
RNAseq _generating tx2gene table and using kallisto output to run DEseq
deseq annotate
updated 5.8 years ago by 40k • written 5.8 years ago by • 0
0
votes
4
replies
5.6k
views
How to annotate the Affymetrix Human Genome U133 Plus 2.0 Array chip
oligo annotate
5.9 years ago llkxiaolan • 0
0
votes
1
reply
1.3k
views
How many genes are appropriate for GO enrichment analysis
go annotate rna-seq clusterprofiler
updated 5.9 years ago by ▴ 120 • written 5.9 years ago by • 0
0
votes
1
reply
1.1k
views
querying annotation hub for common TF, in common cell line returns no results....
annotate annotationhub
updated 6.0 years ago by 3.5k • written 6.0 years ago by ▴ 50
0
votes
8
replies
1.4k
views
Can't find Ly76 on my Affymetrix MoGene 2.0ST array annotated with pd.mogene.2.0.st package
pd.mogene.2.0.st mogene20sttranscriptcluster.db annotate
updated 6.1 years ago by 63k • written 6.1 years ago by • 0
0
votes
3
replies
2.0k
views
Getting Differentially Expressed Genes from GOSeq Categories
goseq gene ontology biomart annotate category
updated 6.2 years ago by ▴ 360 • written 6.3 years ago by ▴ 10
0
votes
1
reply
991
views
Annotation of Probe id to Gene
bioconductor annotate microarray arabidopsis thaliana
updated 6.2 years ago by 63k • written 6.2 years ago by • 0
0
votes
4
replies
1.2k
views
TimmR error for hgu133a.db
software error annotate hgu133a
updated 6.6 years ago by 63k • written 6.6 years ago by • 0
3
votes
6
replies
2.3k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation microarray annotate annotationforge
6.6 years ago MOD • 0
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 10
1
vote
2
replies
1.9k
views
blastSequences queries failing due to BLAST switch to https?
annotate blastSequences BLAST https
updated 7.0 years ago by 25k • written 7.0 years ago by • 0
0
votes
2
replies
1.4k
views
Problems using intansv...
annotate annotate
updated 7.3 years ago by • 0 • written 9.5 years ago by ▴ 10
2
votes
1
reply
896
views
Use matchPattern for large DNAStrings
biostrings annotate
updated 7.3 years ago by 16k • written 7.3 years ago by ▴ 40
0
votes
1
reply
1.2k
views
How to identify the microarray annotation library automatically from GEO study ID?
limma microarray annotation bioconductor annotate
updated 7.4 years ago by 63k • written 7.4 years ago by • 0
0
votes
1
reply
1.3k
views
Getting data on the out-of-frame transcripts
annotate sequencing genomicfeatures
updated 8.2 years ago by 16k • written 8.2 years ago by • 0
0
votes
1
reply
1.8k
views
Difference in TxDb.Hsapiens.UCSC.hg19.knownGene and UCSC knownGene
annotate exons txdb.hsapiens.ucsc.hg19.knowngene
8.3 years ago adnan.niazi • 0
0
votes
1
reply
1.1k
views
.getNcbiURL returns old NCBI url ?
annotate ncbi url
8.8 years ago reuma • 0
0
votes
1
reply
1.5k
views
can't run functions in 'annotate'
annotate
8.8 years ago boris.steipe • 0
1
vote
2
replies
1.4k
views
about library(Homo.sapiens) from TxDb.Hsapiens.UCSC.hg18.knownGene
annotate
8.9 years ago Bogdan ▴ 660
2
votes
2
replies
1.6k
views
BLAST export library 'annotate'
blast annotate biostrings export fasta
8.9 years ago b.stielow • 0
5
votes
2
replies
9.7k
views
Probe to gene id conversion
annotate biomart probe to gene id
updated 8.9 years ago by 63k • written 8.9 years ago by ▴ 20
0
votes
6
replies
2.0k
views
Missing as.list generic from AnnotationDbi?
annotate AnnotationDbi annotate AnnotationDbi
updated 9.0 years ago by ★ 2.0k • written 10.3 years ago by 7.8k
0
votes
2
replies
1.6k
views
Bioconductor Digest, Vol 138, Issue 27
annotate biovizBase ggbio UniProt.ws Pbase annotate biovizBase ggbio UniProt.ws Pbase
updated 9.1 years ago by ▴ 490 • written 9.1 years ago by 1.6k
0
votes
1
reply
1.3k
views
Positional Details with Features through UniProt.ws Ultimately to display as tracks in ggbio
annotate ggbio annotate ggbio
updated 9.1 years ago by ▴ 490 • written 9.1 years ago by ▴ 30
0
votes
0
replies
1.2k
views
ChIPpeakAnno
SNP Annotation annotate convert SNP Annotation annotate convert
9.1 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.1k
views
non-CpG methylated regions and strand information in MEDIPS output
BSgenome annotate biomaRt BSgenome MEDIPS BSgenome annotate biomaRt BSgenome MEDIPS
updated 9.2 years ago by ▴ 570 • written 9.2 years ago by ★ 12k
0
votes
1
reply
1.6k
views
annotation for TAqman assay IDs
Annotation probe annotate Annotation probe annotate
updated 9.2 years ago by 63k • written 9.2 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Affymetrix mouse 430_2 array - annotation problem
Annotation mouse4302 annotate Annotation mouse4302 annotate
updated 9.2 years ago by 63k • written 9.2 years ago by ▴ 550
0
votes
5
replies
3.9k
views
annotating microarray data with mogene10stv1
Microarray Annotation annotate limma ASSIGN Microarray Annotation annotate limma ASSIGN
updated 9.2 years ago by 63k • written 9.2 years ago by ▴ 70
0
votes
2
replies
2.6k
views
Biomart annotation
annotate convert annotate convert
updated 9.2 years ago by ▴ 190 • written 9.2 years ago by ▴ 40
0
votes
5
replies
2.4k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.3 years ago by ▴ 160 • written 9.3 years ago by 63k
1
vote
8
replies
3.4k
views
GRanges apply functions
GO annotate GO annotate
updated 9.3 years ago by ★ 4.2k • written 9.3 years ago by ▴ 380
0
votes
1
reply
2.7k
views
ChIPseeker: Error in annotatePeak
Sequencing GO annotate ChIPseeker Sequencing GO annotate ChIPseeker
9.4 years ago António Miguel de Jesus Domingues ▴ 490
0
votes
1
reply
1.4k
views
ChIPpeakAnno
annotate ChIPpeakAnno annotate ChIPpeakAnno
updated 9.4 years ago by ★ 4.3k • written 9.4 years ago by ▴ 350
0
votes
0
replies
852
views
lumi-package problem: nuID [e.g. nuID2EntrezID()] from vignette example throws an error on my system
annotate annotate
9.5 years ago Guest User ★ 12k
2
votes
1
reply
1.1k
views
HTqPCR- gene names not maintained in limmaCtData
annotate ddCt HTqPCR annotate ddCt HTqPCR
9.6 years ago Cornwell, Adam ▴ 110
0
votes
9
replies
1.7k
views
variantAnnotation: alternative GENETIC_CODE, and circular chromosomes?
VariantAnnotation Cancer Yeast annotate Biostrings VariantAnnotation VariantAnnotation
updated 9.7 years ago by 16k • written 9.7 years ago by ▴ 740
0
votes
0
replies
790
views
Ontology
Annotation GO annotate GOstats Annotation GO annotate GOstats
9.7 years ago Marc Carlson ★ 7.2k
0
votes
0
replies
1.1k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation Annotation PolyPhen SIFT annotate VariantAnnotation ensemblVEP Annotation
9.8 years ago Valerie Obenchain ★ 6.8k
0
votes
5
replies
1.3k
views
multiple annotations with get()?
Biobase annotate convert Biobase annotate convert
updated 10.0 years ago by 21k • written 10.0 years ago by ▴ 230
0
votes
2
replies
1.3k
views
limma_3.17.23 - missing ILMN identifiers in EList objects after read.ilmn
Annotation Normalization GO probe annotate Annotation Normalization GO probe annotate
updated 10.0 years ago by ★ 3.5k • written 10.0 years ago by ▴ 120
50 results • Page 1 of 1
Recent ...
Replies
Comment: ComBat_seq function in sva package does not return a matrix by Federico ▴ 10
Thanks for your help, problem solved :)
Answer: ComBat_seq function in sva package does not return a matrix by ATpoint ★ 3.4k
That happens if your `x` is a data.frame rather than a matrix. It is listed under the Q&A section in https://github.com/zhangyuqing/ComBat-…
Answer: error running exp2grn by Fabricio Almeida-Silva ▴ 40
Hi, Adriana. It seems like the gene IDs you specified in `Host13tfs$Protein.ID` do not match any gene IDs in the row names of your expr…
Comment: Singlecell protein surface (ADT) pseudotime techniques by EspressoKris ▴ 10
I was thinking that they may not perform as well due to the low number of features and derived PCs. But I haven't tried them yet so I am un…
Comment: Singlecell protein surface (ADT) pseudotime techniques by ATpoint ★ 3.4k
How is this different from a "normal" pseudotime tracking other that in your case you give the ADT count matrix rather than the RNA matrix …
Votes
ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Awards • All
Popular Question to Jitendra ▴ 10
Popular Question to boczniak767 ▴ 720
Popular Question to Gordon Smyth 48k
Popular Question to James W. MacDonald 63k
Popular Question to nhaus • 0
Locations • All
Italy, just now
United States, 1 minute ago
Switzerland, 1 minute ago
Montenegro, 6 minutes ago
United States, 9 minutes ago
Traffic: 741 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6