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Error
•
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0
votes
0
replies
197
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult
DEqMS
sca.adj.pval
error
p-value
3 months ago
Bastian
• 0
0
votes
3
replies
313
views
tximport error
error
tximport
updated 5 months ago by
Michael Love
39k • written 5 months ago by
hana
• 0
0
votes
3
replies
535
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet
Assay
NanoString
Error
Data
updated 6 months ago by
James W. MacDonald
62k • written 6 months ago by
junli1988
• 0
0
votes
7
replies
737
views
Centos 7.8, custom-compiled R-4.1: iPath_1.0.0 won't install
error
iPath
R
compilation
13 months ago
wjb2130
• 0
0
votes
2
replies
396
views
Error in TFBSTools at SitesetList
error
TFBSTools
R
15 months ago
HELEN
• 0
4
votes
9
replies
2.8k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt
error
getBM
updated 20 months ago by
Mike Smith
★ 5.9k • written 23 months ago by
Zen
▴ 20
0
votes
3
replies
483
views
bioconductor.org not reachable from EU region
error
http429
server
21 months ago
ashu.upadhyay2206
• 0
0
votes
2
replies
702
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error
DESeq2
Install
updated 23 months ago by
James W. MacDonald
62k • written 23 months ago by
Mick
• 0
1
vote
2
replies
2.1k
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
23 months ago
james
• 0
3
votes
4
replies
1.8k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error
mac
DESeq2
GenomeInfoDb
R
2.1 years ago • updated 2.0 years ago
Dan
▴ 20
1
vote
1
reply
560
views
Errors in installing RforProteomics package
error
RforProteomics
Install
updated 2.2 years ago by
Mike Smith
★ 5.9k • written 2.2 years ago by
Phoebe
• 0
0
votes
1
reply
406
views
testClusters and trimClusters error in BiSeq
BiSeq
testClusters
error
dmr
2.6 years ago
akhaira
• 0
6
votes
6
replies
679
views
Suggestion for next revision of edgeR User Guide re Design matrix setup
edger
error
updated 2.7 years ago by
Gordon Smyth
47k • written 2.7 years ago by
pdunn
• 0
0
votes
14
replies
1.2k
views
annFUN error TOPGO
TOPGO
annFUN
error
updated 2.8 years ago by
Kevin Blighe
3.7k • written 2.8 years ago by
eleonora.porcu
• 0
0
votes
0
replies
299
views
Error on FindOptimalBinning function
bhc
error
2.9 years ago
pavel.granalacant
• 0
0
votes
0
replies
376
views
Multicollinearity and pR2Y =0.1
opls-da
error
multicollinearity
3.0 years ago
adriana.roca-fernandez
• 0
0
votes
1
reply
592
views
boxplot Error in Bioconductor
boxplot
bioconductor
R
error
3.1 years ago
l154359
• 0
0
votes
4
replies
602
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome
peaks
error
Job
updated 3.2 years ago by
James W. MacDonald
62k • written 3.2 years ago by
anne.kannengiesser
• 0
0
votes
5
replies
789
views
readTranscriptFeatures from genomation
R
Rstudio
Error
readTranscriptFeatures
genomation
updated 3.2 years ago by
altuna akalin
▴ 20 • written 3.2 years ago by
hwaterma
• 0
0
votes
3
replies
446
views
Error in E-Eb Limma package
limma
error
E-Eb
updated 3.3 years ago by
Gordon Smyth
47k • written 3.3 years ago by
diego.orihuelatacuri
• 0
4
votes
7
replies
723
views
bam files to hilbert curve
HilbertCurve
error
bamfiles
GRobject
3.4 years ago
adklts
• 0
0
votes
6
replies
6.0k
views
Rhtslib - install error
Rhtslib
installation
error
zlib
updated 3.4 years ago by
leoadam014
• 0 • written 4.3 years ago by
boboshaq
• 0
0
votes
1
reply
806
views
DiffBind dba error
DiffBind
dba
R
error
updated 3.5 years ago by
Rory Stark
★ 4.6k • written 3.7 years ago by
annika-helverson
• 0
0
votes
1
reply
818
views
Help with installation of readat package
readat
error
updated 3.5 years ago by
shepherl
3.4k • written 3.5 years ago by
tbryson1
• 0
2
votes
2
replies
1.1k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 3.6 years ago by
Tiago C. Silva
▴ 220 • written 3.6 years ago by
Talip Zengin
▴ 10
0
votes
1
reply
995
views
R: oligo packages install error
oligo
packages
error
updated 3.6 years ago by
Martin Morgan
25k • written 3.6 years ago by
get3232
• 0
0
votes
0
replies
526
views
Error in parseGenBank
genbankr
parseGenBank
gbk
error
3.6 years ago
ashley.dederich
• 0
2
votes
3
replies
586
views
How can I overcome the error of "No residual degrees of freedom in linear model fits"?
limma
microarray
error
updated 3.6 years ago by
Dario Strbenac
★ 1.5k • written 3.6 years ago by
Jurat Shahidin
▴ 70
0
votes
6
replies
2.6k
views
Error in getOneSeqFromBSgenomeMultipleSequences During singeR tutorial
error
3.6 years ago
dfcarril
• 0
0
votes
4
replies
1.2k
views
DESeq2 compare all_vs_all levels error
deseq2
error
RNAseq
updated 3.6 years ago by
swbarnes2
★ 1.2k • written 3.6 years ago by
aishu.jp
▴ 30
0
votes
3
replies
615
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops
cn.mops
error
updated 3.6 years ago by
Martin Morgan
25k • written 3.6 years ago by
s1812756
• 0
0
votes
6
replies
1.4k
views
atacseqQC error while splittin the bamfile
ATACseqQC
ATAC-seq
error
split bam file
updated 3.8 years ago by
contact
• 0 • written 3.8 years ago by
theodore.georgomanolis
• 0
0
votes
8
replies
1.5k
views
tximport command error
tx2gene
txi
error
updated 3.8 years ago by
James W. MacDonald
62k • written 3.8 years ago by
eliztran
• 0
2
votes
6
replies
803
views
EdgeR glmTreat error
edger
error
updated 3.8 years ago by
James W. MacDonald
62k • written 3.8 years ago by
lucap
• 0
1
vote
1
reply
730
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt
error
updated 3.8 years ago by
James W. MacDonald
62k • written 3.8 years ago by
steppydeklin
▴ 10
0
votes
1
reply
539
views
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
error
wgcna
affymetrix data
updated 3.8 years ago by
Peter Langfelder
★ 2.7k • written 3.8 years ago by
pratikshasharma47
• 0
2
votes
6
replies
1.2k
views
featurecounts Rsubread ERROR on exon_id
R
error
software error
Rsubread
featurecounts
updated 3.9 years ago by
Wei Shi
★ 3.5k • written 3.9 years ago by
edejong
• 0
2
votes
3
replies
2.7k
views
DESeq2- preliminary study no replicates
deseq2
replicates
error
DESeqDataSetFromMatrix
updated 3.9 years ago by
Michael Love
39k • written 3.9 years ago by
Yonatan Amzaleg
• 0
1
vote
1
reply
736
views
Error in getBM(c("affy_rice", "ensembl_gene_id", "entrezgene", "external_gene_name"), : could not find function "featureNames"
annotation
error
biomaRT
affy
ricedataset
updated 3.9 years ago by
Mike Smith
★ 5.9k • written 3.9 years ago by
pratikshasharma47
• 0
1
vote
2
replies
1.4k
views
Errors installing mzR package
proteomics
error
updated 3.9 years ago by
Laurent Gatto
1.6k • written 3.9 years ago by
pdaltron
• 0
2
votes
5
replies
2.4k
views
GDCdownload does not work
GDCdow
tcgabiolinks
error
tcgadownload
download_error
updated 4.1 years ago by
Tiago Chedraoui Silva
▴ 260 • written 4.1 years ago by
miki716
• 0
0
votes
1
reply
532
views
Linking PhosMap to issue number: 953
error
github package contribution
updated 4.2 years ago by
Martin Morgan
25k • written 4.2 years ago by
ecnuzdd
• 0
0
votes
2
replies
855
views
Biostrings: revComp error: Not compatible with STRSXP
biostrings
Error
Not compatible with STRSXP
4.2 years ago
camille.4nier
• 0
0
votes
1
reply
754
views
Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
Conda
affyio
error
4.3 years ago
benjamin.saintpierre
• 0
0
votes
6
replies
808
views
DEsubs - Error in read.table during DEsubs command
DEsubs
error
updated 4.4 years ago by
Panos Balomenos
• 0 • written 4.5 years ago by
Talip Zengin
▴ 10
0
votes
2
replies
1.0k
views
Error in saving diffmeth data
error
4.5 years ago
kjfilipski
• 0
1
vote
5
replies
998
views
How do I stop DESeq2 from loading and additional errors related to the package.
r
deseq2
error
updated 4.6 years ago by
Axel Klenk
▴ 990 • written 4.6 years ago by
mdi3
• 0
0
votes
0
replies
586
views
Error while extracting pseudo amino acid composition using protr
r
source code
error
4.7 years ago
shreyasarkar0
• 0
5
votes
7
replies
2.2k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 4.7 years ago by
James W. MacDonald
62k • written 4.7 years ago by
Miskey, Csaba
▴ 20
0
votes
1
reply
742
views
Error: 'unknown input format' while trying http://bioconductor.org/packages/3.7/bioc
error
oligo
affy
4.7 years ago
kritikamish99
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 and heatmap for multiple comparisons
by
artem.vorobyev
• 0
this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…
Comment: athPkgBuilder data source :missing probesets
by
nicklesteele532
• 0
> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…
Comment: Why in Bioconductor community people rarely upvote questions?
by
Hervé Pagès
16k
BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …
Answer: DESeq2 and heatmap for multiple comparisons
by
swbarnes2
★ 1.2k
If you want to know what genes are different between lesion and treated, compare them to each other.
Votes
Comment: recount 3 protect read length metadata
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
C: Batch correction in DESeq2
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
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