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estimateCellCounts
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Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
4.9 years ago
grayapply2009
• 0
0
votes
0
replies
1.2k
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estimateCellCounts issue with EPIC array data in minfi
minfi
estimatecellcounts
6.5 years ago
a.webster
• 0
0
votes
1
reply
2.3k
views
getSex error even when sex is provided
minfi
estimatecellcounts
getSex
preprocessQuantile
updated 6.7 years ago by
Kasper Daniel Hansen
★ 6.5k • written 6.7 years ago by
fgc
• 0
1
vote
1
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1.9k
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Limma with paired samples and SVA
limma
sva
duplicatecorrelation
estimatecellcounts
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
wliao
• 0
0
votes
1
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2.1k
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How to convert GenomicRatioSet to RGChannelSet in minfi::compartments()
minfi
estimateCellCounts
methylation
updated 7.7 years ago by
Kasper Daniel Hansen
★ 6.5k • written 7.7 years ago by
stewart999
▴ 10
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Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
biostars.org and the [bioinformatics reddit][1] are suitable and have much larger audience than this forum here. [1]: https://www.reddi…
Comment: Overcoming confounding in batch effect correction
by
bbao
▴ 10
Thank you! And apologies for posting here. Do you know which forum I should go to in the future for questions like these?
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
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Answer: Store Matrix in DataFrame Cell
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Comment: Overcoming confounding in batch effect correction
Overcoming confounding in batch effect correction
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