Biostar EstimateCellCounts

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543

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minfi cell proportion estimateCellCounts DNA Methylation

3.0 years ago grayapply2009 • 0

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787

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minfi estimatecellcounts

4.6 years ago a.webster • 0

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1.5k

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minfi estimatecellcounts getSex preprocessQuantile

updated 4.8 years ago by Kasper Daniel Hansen 6.5k • written 4.8 years ago by fgc • 0

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1.2k

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limma sva duplicatecorrelation estimatecellcounts

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by wliao • 0

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1.3k

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minfi estimateCellCounts methylation

updated 5.9 years ago by Kasper Daniel Hansen 6.5k • written 5.9 years ago by stewart999 ▴ 10

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Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k

Apologies. The first line should be result <- dba(sampleSheet=samples) I've gone back and edited previous replies to reflect this.

Answer: *** caught segfault *** , cause 'memory not mapped' by James W. MacDonald 62k

You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…

Comment: Help with Error in DiffBind by Chris • 0

Thanks Rory! result <- dba(samples) Error in if ((length(callers) == 1) & (callers[1] == "counts")) { : argument is of len…

Answer: Help with Error in DiffBind by Rory Stark ★ 4.7k

In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…

Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k

Looks like you should either delete the file > /labs/PI/atacseq_output_03172023/bwa/merged_library/DISEASED_REP2.mLb.clN.sorted.bam.bai …

Votes

Comment: Help with Error in DiffBind

WGCNA: Module preservation vs consensus analysis

Answer: Help with Error in DiffBind

Comment: Help with Error in DiffBind

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