Biostar DNA Methylation

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537

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minfi cell proportion estimateCellCounts DNA Methylation

3.0 years ago grayapply2009 • 0

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1.0k

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normalization DNA methylation WGCNA

updated 3.8 years ago by Peter Langfelder ★ 2.7k • written 3.8 years ago by enora.fremy • 0

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641

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medips medip-seq dna methylation dmr analysis

updated 4.3 years ago by Lukas Chavez ▴ 570 • written 4.3 years ago by mtefit • 0

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1.1k

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R gdc rna-seq dna methylation

updated 4.4 years ago by Sean Davis 21k • written 4.4 years ago by RichardJActon ▴ 50

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788

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minfi normalization outliers dna methylation densityplot

4.7 years ago peter.fransquet • 0

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519

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differential variability dna methylation iEVORA DVP

4.9 years ago poojitha.stemcell ▴ 10

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712

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rnbeads methylation methylationepic dna methylation

5.1 years ago gabrielrfries • 0

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733

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dna methylation biseq

updated 5.2 years ago by Gordon Smyth 47k • written 5.2 years ago by ahmad.moousavi • 0

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1.2k

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tcgabiolinks dna methylation

updated 5.3 years ago by Marcel Ramos 640 • written 5.3 years ago by michaelwxf2012 • 0

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955

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dna methylation illimina 450k methylation beta M significance

updated 5.5 years ago by James W. MacDonald 62k • written 5.5 years ago by skids121 • 0

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948

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CNV minfi preprocessing dna methylation

6.0 years ago Thomas • 0

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749

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microarray HM450 dna methylation cohcap

updated 6.2 years ago by James W. MacDonald 62k • written 6.2 years ago by poojitha.stemcell ▴ 10

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854

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minfi bumphunter DNA methylation illumina450k

updated 6.8 years ago by James W. MacDonald 62k • written 6.8 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0

Hi Rory, I came up with another question while analyzing my data. A scenario of analysis: Path to bam files, path to peaks files (broad pe…

Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R by Yang Shi ▴ 10

Thanks for your reply sir! Here is the data ([EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv][1]). And there is the data process…

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va by davidhillis • 0

Thank you!

Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

Thank you Gordon for your time and patience, I'd try to be more specific. I've read carefully the three first chapters of `edgeR` user guid…

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va by James W. MacDonald 62k

This works for me. ``` > library(VariantAnnotation) > library(TxDb.Hsapiens.UCSC.hg19.knownGene) > txdb <- TxDb.Hsapiens.UCSC.hg19.knownGe…

Votes

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

A: Pathway analysis of differentially methylated CpGs

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

Answer: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

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