Bioconductor Fastmnn

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806

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scanpy scRNAseq fastmnn r

14 months ago Madiha • 0

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873

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batchelor fastMNN scRNAseq

16 months ago Guandong Shang ▴ 40

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1.7k

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scater batchelor scRNAseq fastMNN

updated 16 months ago by Aaron Lun ★ 28k • written 16 months ago by Guandong Shang ▴ 40

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783

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fastmnn batchelor BatchEffect

2.2 years ago p.joshi ▴ 40

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933

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fastmnn scater batchelor

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by ATpoint ★ 3.6k

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432

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fastMNN Interpretation

3.5 years ago mloza ▴ 10

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854

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 3.6 years ago by Aaron Lun ★ 28k • written 4.3 years ago by rmf ▴ 20

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1.1k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 3.7 years ago by Aaron Lun ★ 28k • written 3.7 years ago by sorjuelal • 0

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1.3k

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SCRAN fastMNN mnnCorrect

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by tobi • 0

9 results • Page 1 of 1

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Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Votes

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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