Bioconductor FastMNN

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1.8k

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fastMNN SingleCellData BatchEffect batchelor

16 months ago José • 0

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2.0k

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scanpy scRNAseq fastmnn r

3.4 years ago Madiha • 0

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2.1k

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batchelor fastMNN scRNAseq

3.6 years ago Guandong Shang ▴ 40

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3.3k

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scater batchelor scRNAseq fastMNN

updated 3.6 years ago by Aaron Lun ★ 29k • written 3.6 years ago by Guandong Shang ▴ 40

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1.8k

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fastmnn batchelor BatchEffect

4.5 years ago p.joshi ▴ 40

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2.0k

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fastmnn scater batchelor

updated 5.7 years ago by Aaron Lun ★ 29k • written 5.7 years ago by ATpoint ★ 5.0k

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964

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fastMNN Interpretation

5.8 years ago mloza ▴ 10

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1.7k

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 5.9 years ago by Aaron Lun ★ 29k • written 6.6 years ago by firestar ▴ 20

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2.4k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 6.0 years ago by Aaron Lun ★ 29k • written 6.0 years ago by sorjuelal • 0

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1.9k

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SCRAN fastMNN mnnCorrect

updated 7.7 years ago by Aaron Lun ★ 29k • written 7.7 years ago by tobi • 0

10 results • Page 1 of 1

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Answer: Is it still possible to do batch correction for my data? by Gordon Smyth 53k

I agree with the comments from James MacDonald, but I will add that if you use the standard linear model correction for batch ``` design <-…

Answer: specifying refColumn in calcNormFactors() by Gordon Smyth 53k

Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…

Answer: Sex prediction in sesame for EPICV2 by Tim Peters ▴ 230

Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…

Comment: Convergence Issues and Model Selection DESeq2 by dani.guan.3 • 0

Thank you, I appreciate your time and help.

Comment: Convergence Issues and Model Selection DESeq2 by Michael Love 43k

> out of my 30,229 genes, 795 (2.6%) are better explained ... Not exactly. Frequentist statistics is not symmetric in this way. If it were…

Votes

DiffBind dropping peaks in ATAC-seq data

A: decideTests() options in LIMMA

A: Removing cell cycle genes in large data set integration

Answer: Quick two questions on limpa

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