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fastMNN
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1.7k
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Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN
SingleCellData
BatchEffect
batchelor
16 months ago
José
• 0
0
votes
3
replies
2.0k
views
scRNA-seq: RS4' object has no attribute 'T'" in fastMNN R function
scanpy
scRNAseq
fastmnn
r
3.4 years ago
Madiha
• 0
4
votes
2
replies
2.0k
views
how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor
fastMNN
scRNAseq
3.6 years ago • updated 3.5 years ago
Guandong Shang
▴ 40
0
votes
4
replies
3.2k
views
how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater
batchelor
scRNAseq
fastMNN
updated 3.6 years ago by
Aaron Lun
★ 29k • written 3.6 years ago by
Guandong Shang
▴ 40
2
votes
2
replies
1.8k
views
Does MNN removes same average batch vector from all cells or each cell has it's own correction vector?
fastmnn
batchelor
BatchEffect
4.4 years ago
p.joshi
▴ 40
3
votes
1
reply
2.0k
views
Scaling option in fastMNN
fastmnn
scater
batchelor
updated 5.7 years ago by
Aaron Lun
★ 29k • written 5.7 years ago by
ATpoint
★ 5.0k
0
votes
0
replies
962
views
fastMNN reconstructed matrix
fastMNN
Interpretation
5.7 years ago
mloza
▴ 10
2
votes
1
reply
1.6k
views
batchelor batch correction correction runs into errors
batchelor
batch-correction
mnncorrect
fastmnn
rna-seq
updated 5.9 years ago by
Aaron Lun
★ 29k • written 6.5 years ago by
firestar
▴ 20
1
vote
2
replies
2.3k
views
how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
fastMNN
CITE-seq
ADT-seq
batchelor
REAP-seq
updated 5.9 years ago by
Aaron Lun
★ 29k • written 5.9 years ago by
sorjuelal
• 0
1
vote
2
replies
1.9k
views
SCRAN - Question: Error when calling cosineNorm through fastMNN
SCRAN
fastMNN
mnnCorrect
updated 7.6 years ago by
Aaron Lun
★ 29k • written 7.6 years ago by
tobi
• 0
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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