Biostar FetchExtendedChromInfoFromUCSC

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 6.3 years ago by Hervé Pagès 15k • written 6.3 years ago by gokcen.eraslan ▴ 10

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Comment: rtracklayer S.h by gibran • 0

Thanks, much appreciated. So I think this approach actually gets binaries and I'm not sure how to isolate the problem I was experiencing as…

Comment: DESeq2, Calculate the size factor by using median-of-ratio by KEREN • 0

Hi Michael, thank you for you reply. My concern here mainly focus on the high variances in samples of condition "mESC_mRNA_WT". I observed…

Comment: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by Rory Stark ★ 4.4k

I agree the documentation could be clearer -- it took me a while to understand what it said so I could address your issue!

Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by chrarnold • 0

Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…

Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by Rory Stark ★ 4.4k

The object in the `.rds` file, `sampleMetaData.df`, is already a `DBA` object, with eight samples: > sampleMetaData.df <- readRDS("~/D…

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Answer: rtracklayer S.h

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