Bioconductor Refseq

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994

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refseq Bioconductor conversion

4.0 years ago heiko_kin ▴ 60

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671

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RefSeq Chromosome Mutalyzer

4.7 years ago heiko_kin ▴ 60

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2.3k

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tximport Gene IDs txdb RefSeq Salmon

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by holmkn • 0

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3.1k

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edgeR ENEMBL RefSeq

updated 5.7 years ago by Gordon Smyth 52k • written 5.7 years ago by mzillur • 0

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2.8k

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genomicfeatures maketxdbfromucsc refseq

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by Sebastien Vigneau ▴ 10

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3.9k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 8.9 years ago by Hervé Pagès 16k • written 8.9 years ago by gokcen.eraslan ▴ 10

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3.1k

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promoter granges refseq ucsc organismdb

updated 9.0 years ago by Robert Castelo ★ 3.4k • written 9.0 years ago by efoss ▴ 10

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3.9k

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refseq annotationhub

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by dalloliogm ▴ 50

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1.8k

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customprodb dbsnp refseq varianttools

updated 9.4 years ago by xiaojing.wang ▴ 50 • written 9.4 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

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Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by ATpoint ★ 4.6k

Unknown reason means that from the results you show one cannot easily infer why exactly the IF removed this gene in one but not in the othe…

Comment: Can we get beta values with DMRcate package by Melisa Tecik • 0

Thank you so much for the detailed explanation. I have loaded the package and already used dmrcate and extractRanges functions. I had no …

Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by fjrsa • 0

I would say baseMean, read counts, L2FC, ... are very similar between the two experiments - that's why I was wondering about the results. …

Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by ATpoint ★ 4.6k

As said, literally identical on a continuous scale but different in categorical terms.

Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe by fjrsa • 0

![enter image description here][1] [1]: /media/images/3d53e4b4-f561-41ee-a5d8-6c3c93e7

Votes

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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