Biostar Refseq

Showing : refseq • reset

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302

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refseq Bioconductor conversion

13 months ago heiko_kin ▴ 50

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147

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RefSeq Chromosome Mutalyzer

21 months ago heiko_kin ▴ 50

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369

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tximport Gene IDs txdb RefSeq Salmon

updated 24 months ago by Michael Love 35k • written 24 months ago by holmkn • 0

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1.4k

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edgeR ENEMBL RefSeq

updated 2.8 years ago by Gordon Smyth 44k • written 2.8 years ago by mzillur • 0

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1.8k

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genomicfeatures maketxdbfromucsc refseq

updated 5.5 years ago by Hervé Pagès 15k • written 5.5 years ago by Sebastien Vigneau ▴ 10

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2.2k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 6.0 years ago by Hervé Pagès 15k • written 6.0 years ago by gokcen.eraslan ▴ 10

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1.4k

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promoter granges refseq ucsc organismdb

updated 6.2 years ago by Robert Castelo ★ 2.8k • written 6.2 years ago by efoss ▴ 10

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2.7k

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refseq annotationhub

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by dalloliogm ▴ 40

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1.0k

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customprodb dbsnp refseq varianttools

updated 6.5 years ago by xiaojing.wang ▴ 50 • written 6.5 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

Recent ...

Replies

Answer: Unusal standard deviation after rlog transformation and the homoscedasticity of by Michael Love 35k

I'm guessing this data does not conform well to the assumptions of the rlog, which are that variation is distributed a certain way from exp…

Answer: Affymetrix chip which is not listed on this webpage by James W. MacDonald 58k

You can't use the `affy` package for Clariom S arrays, but instead have to use the `oligo` package. I don't believe `affylmGUI` uses `oligo…

Comment: deseq2 + filtering low counts with noiseq function by Michael Love 35k

Nothing especially concerning about nonparametric methods in my opinion, except that with very low sample size they lose sensitivity. E.g. …

Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6 by Rory Stark ★ 4.3k

I've checked in a fix that should handle this warning condition, it is active in the currently downloadable version if you do a `BiocManage…

Answer: How to get all possible comparisons in DiffBind by Rory Stark ★ 4.3k

Note that contrasts are handled differently since `DiffBind_3.0`. You can still calculate results for multiple contrasts simultaneously, bu…

Votes

A: How to get all possible comparisons in DiffBind

Answer: Limma prametrization

Comment: Limma prametrization

A: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom

Answer: Unable to GetGRangesFromEnsDb

Awards • All

Teacher to Rory Stark ★ 4.3k

Prophet to nabiyogesh • 0