Biostar Refseq

Showing : refseq • reset

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refseq Bioconductor conversion

8 months ago heiko_kin ▴ 50

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RefSeq Chromosome Mutalyzer

16 months ago heiko_kin ▴ 50

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191

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tximport Gene IDs txdb RefSeq Salmon

updated 18 months ago by Michael Love 33k • written 18 months ago by holmkn • 0

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1.1k

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edgeR ENEMBL RefSeq

updated 2.4 years ago by Gordon Smyth 43k • written 2.4 years ago by mzillur • 0

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1.6k

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genomicfeatures maketxdbfromucsc refseq

updated 5.0 years ago by Hervé Pagès 15k • written 5.0 years ago by Sebastien Vigneau ▴ 10

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2.1k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 5.5 years ago by Hervé Pagès 15k • written 5.5 years ago by gokcen.eraslan ▴ 10

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1.2k

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promoter granges refseq ucsc organismdb

updated 5.7 years ago by Robert Castelo ★ 2.7k • written 5.7 years ago by efoss ▴ 10

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2.5k

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refseq annotationhub

updated 5.8 years ago by Martin Morgan 25k • written 5.8 years ago by dalloliogm ▴ 40

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923

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customprodb dbsnp refseq varianttools

updated 6.1 years ago by xiaojing.wang ▴ 50 • written 6.1 years ago by kristenbeck527 • 0

9 results • Page 1 of 1

Recent ...

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Answer: Compilation fatal error: iostream.h: No such file or directory when installing R by Kevin Blighe 3.2k

It is likely that you need to install the libraries on your Ubuntu OS outside R, via: apt-get install libhdf5-dev Note: use `sudo` if…

Comment: Combining HTSeq and RNA-SeQ for differential analysis by szomolay • 0

The disease data is from TCGA and the normal data is from GTEx. I am trying to do DE analysis and I am aware of the Xena portal where log2(…

Comment: Problems with installation of 'phyloseq by Kevin Blighe 3.2k

What messages do you receive when you try to install the *GenomeInfoDbData* package?

Answer: derfinder model.matrix with limma or single base-level F-statistics analysis by Leonardo Collado Torres ▴ 890

Hi, Can you provide an example that breaks? The following R code works for me: ```R library("derfinder") set.seed(20210801) pheno …

Comment: Combining HTSeq and RNA-SeQ for differential analysis by ATpoint ▴ 710

The fact that you don't have raw data indicate that disease and healthy conditions come from different datasets or studies, hence there is …

Votes

A: DESeq2: multiple conditions design -- How to select subset comparisons from the

Comment: Idea: Using DESeq2 to test a change in ratio of two genes

A: Normalized counts of DESeq2 affected by design formula?

A: Finding orthologous human/mouse ENSEMBL IDs

Comment: What are these genes ? [How to get Ensembl IDs for them]

Awards • All

Scholar to Leonardo Collado Torres ▴ 890