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Normalizing Affy Almac Xcel Array Data from CEL files
Annotation
affy
oligo
ffpe
Annotation
affy
oligo
ffpe
written 10.3 years ago by
Guest User
★ 13k
2
votes
1
reply
3.1k
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Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2
microrna
lfcThreshold
stable expression
ffpe
updated 8.5 years ago by
Michael Love
41k • written 8.5 years ago by
mariakarand
▴ 20
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0
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906
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beadarray: mRNA QC help
probe
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probe
ffpe
10.3 years ago
Levi Waldron
▴ 80
0
votes
1
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1.5k
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Copy Number Analysis across multiple SNP array plaforms
SNP
Cancer
crlmm
ffpe
SNP
Cancer
crlmm
ffpe
updated 12.0 years ago by
Djork Clevert
▴ 210 • written 12.0 years ago by
Ed Schwalbe
▴ 20
0
votes
1
reply
1.2k
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Analysis of Omni Express / Omni Express FFPE chips
SNP
PROcess
ffpe
SNP
PROcess
ffpe
updated 12.3 years ago by
Valerie Obenchain
★ 6.8k • written 12.4 years ago by
Guest User
★ 13k
5 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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