Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
lfcThreshold
•
reset
0
votes
4
replies
1.6k
views
DESeq2 lfcThreshold - all my padj are equal to 1
DESeq2
lfcThreshold
23 months ago • updated 22 months ago
Abir.khazaal
▴ 10
1
vote
2
replies
1.9k
views
DEseq2 anlysis - LfcThreshold and Lfcshrink options
lfcshrink
DESeq2
RNASeq
lfcthreshold
2.0 years ago
ClaudiaE
• 0
0
votes
5
replies
2.2k
views
Deseq2, lfcThreshold .
ashr
Deseq2
lfcThreshold
updated 2.8 years ago by
Michael Love
42k • written 4.3 years ago by
Iryna
• 0
26
votes
17
replies
7.6k
views
DESeq2 1.20.0 lfcshrink function
deseq2
differential expression
logfoldchange
lfcshrink
lfcthreshold
updated 3.2 years ago by
Michael Love
42k • written 6.1 years ago by
emi.sch
▴ 40
0
votes
1
reply
1.1k
views
DESeq2 - shrunken log fold changes and threshold test
deseq2
lfcshrink
lfcthreshold
differential gene expression
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
corentinrichard374369
• 0
1
vote
2
replies
2.4k
views
[DESeq2] Results summary indicates LFC > and < 0 even with changed lfcThreshold
DESeq2
lfcThreshold
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
Mike
▴ 10
9
votes
2
replies
5.6k
views
log fold change threshold in Deseq2 - using lfcthreshold
lfcthreshold
deseq2
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
lirongrossmann
▴ 80
2
votes
1
reply
3.2k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2
microrna
lfcThreshold
stable expression
ffpe
updated 8.8 years ago by
Michael Love
42k • written 8.8 years ago by
mariakarand
▴ 20
8 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 730
Popular Question
to
maltethodberg
▴ 180
Scholar
to
Michael Love
42k
Popular Question
to
Leonardo Collado Torres
★ 1.1k
Scholar
to
Gordon Smyth
51k
Locations
• All
The city by the bay,
13 minutes ago
France,
16 minutes ago
Hong Kong,
37 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
Ann Arbor,
4 hours ago
Traffic: 481 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6