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fgsea
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FGSEA pre-ranked input in increasing order or decreasing
fgsea
8 days ago • updated 7 days ago
sropri
• 0
1
vote
5
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302
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fgsea fork
fgsea
updated 27 days ago by
James W. MacDonald
65k • written 28 days ago by
yimjohns
• 0
0
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2
replies
330
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The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea
gsea
5 weeks ago • updated 23 days ago
Gordon
• 0
0
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5
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458
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Help with DESeq results to pathways with the fgsea package
fgsea
rna
updated 10 weeks ago by
James W. MacDonald
65k • written 11 weeks ago by
Gordon
• 0
3
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2
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379
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cant' download fgsea_1.20.0.tar.gz
download
fgsea
8 months ago
luca.s
▴ 50
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0
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599
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using fgsea to compare two datasets
GSEA
fgsea
9 months ago
Cen
• 0
0
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0
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819
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
11 months ago
pg45863
▴ 10
7 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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