Bioconductor FilterByExpr

Showing : filterByExpr • reset

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edgeR DESeq2 filterByExpr

updated 7 hours ago by Paul Harrison ▴ 110 • written 13 days ago by caroline.zanchi ▴ 10

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1.3k

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DEG edgeR limma voom filterByExpr

updated 17 months ago by Gordon Smyth 52k • written 17 months ago by annikagable • 0

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1.9k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 24 months ago by Gordon Smyth 52k • written 24 months ago by mohammedtoufiq91 ▴ 10

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3.0k

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CPM filterByExpr edgeR design model.matrix

2.1 years ago mohammedtoufiq91 ▴ 10

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2.9k

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CPM filterByExpr edgeR histogram rowsums

2.4 years ago mohammedtoufiq91 ▴ 10

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Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

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Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

Answer: GAlignments Cigar to GRanges

parameters of filterByExpr

Answer: parameters of filterByExpr

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