Bioconductor Fitted values

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RNA-Seq edger fitted values differential expression normalization

updated 6.3 years ago by Gordon Smyth 53k • written 6.3 years ago by David R ▴ 90

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Comment: Heat Map by 97shandie • 0

Hi Dania, it looks like you're on the right track building your heatmap! It's great you've already filtered your data based on adjusted p-v…

Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Results with PON give more variants by ejafgdf4.ge.r.m • 0

It s common to expect Mutect2 with a PON to be a strict subset of Mutect2 without it but seeing unique variants in Mutect2withPON isn t unu…

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

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Comment: Check removeBatchEffect effectiveness

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