Bioconductor Functional enrichment

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clusterprofiler go enrichment functional enrichment

updated 6.4 years ago by Guangchuang Yu ★ 1.2k • written 6.4 years ago by Jack ▴ 20

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genesetenrichment functional enrichment enrichmentbrowser News

9.2 years ago Ludwig Geistlinger ▴ 70

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SPIA functional enrichment pathway topology pathway analysis bioconductor

9.7 years ago svlachavas ▴ 840

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Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

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Comment: ComBat with repeated measures

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