Biostar GageData

Showing : gageData • reset

0

votes

0

replies

243

views

gage RNASeq gageData Pathways

9 months ago OST • 0

6

votes

5

replies

888

views

KEGG gage gageData pathview

updated 22 months ago by Luo Weijun ★ 1.6k • written 22 months ago by MOHAMMAD • 0

0

votes

0

replies

302

views

gage gageData

23 months ago jd348 • 0

1

vote

2

replies

680

views

gage pathview gageData

written 2.1 years ago by Emilia ▴ 30

4 results • Page 1 of 1

Recent ...

Replies

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540

summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…

Comment: Atena package - error (new user) by beatriz.calvo ▴ 30

Hi Lalani, We have fixed the bug that lead to the error. The new version of the package (with the bug fixed) will be available in 24-48h. …

Votes

Answer: mas5calls function doesn't work; mirna40cdf problem

Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem

Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data

A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings

Awards • All

Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k