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How to use GAGE with my own metagenomic KOFams data
kegg.gsets
gageData
gage
KEGG
12 days ago
cereyredondo
• 0
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Comment: Plot PCA with ellipses using ggplot
by
robledoj13
• 0
Thank you for your the help @ATpoint.
Answer: Validity of SingleR with very small bulk RNAseq reference
by
ATpoint
★ 4.2k
The vignette data are "large" because it is single-cell data and each cell is considered in this case a "replicate". With bulk RNA-seq you …
Answer: Plot PCA with ellipses using ggplot
by
ATpoint
★ 4.2k
This is rather a ggplot than DESeq2 question, please see for example https://stackoverflow.com/questions/49931681/error-too-few-points-to-c…
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
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Answer: Plot PCA with ellipses using ggplot
Answer: Plot PCA with ellipses using ggplot
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
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