Showing : gcRMA • reset
0
votes
8
replies
1.8k
views
error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 520
0
votes
8
replies
1.3k
views
gcrma problem
gcrma gcrma
19.1 years ago Wenqiong Chen ▴ 120
0
votes
15
replies
2.1k
views
affy & problems with memory
affy gcrma affy gcrma
updated 18.3 years ago by ▴ 210 • written 18.3 years ago by ▴ 110
0
votes
4
replies
1.2k
views
gcrma with bpmap file instead of cdf file
cdf gcrma cdf gcrma
17.3 years ago Baoqiang Cao ▴ 30
0
votes
4
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1.2k
views
Problems with Hu6800 and GCRMA...
Microarray hu6800 probe gcrma Microarray hu6800 probe gcrma
20.2 years ago Stiles, David NIH/NIDDK ▴ 50
0
votes
4
replies
1.1k
views
win 64bit and general BioC computing power?
GO Clustering affy limma gcrma PROcess GO Clustering affy limma gcrma PROcess
updated 19.9 years ago by ▴ 360 • written 19.9 years ago by ▴ 940
0
votes
9
replies
2.7k
views
gcrma problem while processing HuGene-1_0-st-v1 genechip from Affymetrix
Normalization gcrma Normalization gcrma
11.9 years ago suparna mitra ▴ 290
0
votes
10
replies
1.9k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 70
0
votes
6
replies
1.3k
views
GCRMA error
gcrma gcrma
19.0 years ago Puhong Gao ▴ 140
0
votes
4
replies
1.0k
views
justGCRMA normalisation options?
gcrma gcrma
updated 20.1 years ago by 65k • written 20.1 years ago by ▴ 60
0
votes
4
replies
1.2k
views
GCRMA backgrounds?
SNP affy gcrma SNP affy gcrma
updated 19.8 years ago by ▴ 940 • written 19.8 years ago by ▴ 60
0
votes
7
replies
1.7k
views
Statistical comparison of low replicate affy data
affy gcrma siggenes LPE affy gcrma siggenes LPE
20.2 years ago Matthew Hannah ▴ 940
0
votes
5
replies
1.2k
views
GCRMA/RMA bimodal distribution
gcrma gcrma
updated 19.7 years ago by ★ 6.0k • written 19.7 years ago by ▴ 940
0
votes
8
replies
1.4k
views
Trouble building Bioconductor
gcrma gcrma
18.2 years ago Atro Tossavainen ▴ 160
0
votes
4
replies
1.2k
views
affy & problems with not enough avaliable memory
affy gcrma affy gcrma
updated 18.3 years ago by ▴ 830 • written 18.3 years ago by ▴ 110
0
votes
3
replies
3.7k
views
Selecting p-value cutoffs for differential expression
limma gcrma limma gcrma
updated 19.6 years ago by ▴ 20 • written 19.7 years ago by ▴ 940
0
votes
4
replies
993
views
a just.gcrma question
gcrma gcrma
updated 18.0 years ago by ▴ 200 • written 18.0 years ago by ▴ 890
0
votes
4
replies
989
views
GCRMA Normalization Differences between Windows and MAC
Normalization gcrma Normalization gcrma
updated 14.1 years ago by ▴ 260 • written 14.1 years ago by ▴ 10
0
votes
4
replies
1.9k
views
Failure to load Biobase
Biobase affy limma gcrma matchprobes affyio Biobase affy limma gcrma matchprobes affyio
updated 18.0 years ago by 25k • written 18.0 years ago by ★ 2.2k
0
votes
3
replies
1.0k
views
how long to calculate gcrma on 16 arrays?
mgu74av2 Biobase affy gcrma mgu74av2 Biobase affy gcrma
updated 20.7 years ago by 65k • written 20.7 years ago by ★ 1.4k
0
votes
5
replies
1.4k
views
Development of GCRMA-like methods
gcrma oligo gcrma oligo
20.3 years ago Matthew Hannah ▴ 940
0
votes
3
replies
999
views
hgu133_plus_2?
Clustering gcrma Clustering gcrma
updated 19.3 years ago by ▴ 150 • written 19.3 years ago by ▴ 10
0
votes
4
replies
916
views
Two rma questions
affy gcrma affy gcrma
updated 20.1 years ago by 65k • written 20.1 years ago by ▴ 180
0
votes
7
replies
1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ★ 2.2k
0
votes
6
replies
1.9k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 16.9 years ago by ▴ 20 • written 17.0 years ago by ▴ 200
0
votes
8
replies
1.5k
views
Tiling array application
probe affy gcrma probe affy gcrma
19.1 years ago Shinhan Shiu ▴ 60
0
votes
11
replies
2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
0
votes
10
replies
1.5k
views
problems with gcrma just.gcrma
mgu74av2 affy gcrma mgu74av2 affy gcrma
17.4 years ago Elisabetta Manduchi ▴ 160
0
votes
4
replies
1.2k
views
How to read and normalize hundreds of CEL files?
Microarray gcrma Microarray gcrma
updated 17.4 years ago by ▴ 820 • written 17.4 years ago by ▴ 80
0
votes
4
replies
1.1k
views
Quantile normalization without using affyBatch
Normalization cdf gcrma Normalization cdf gcrma
updated 19.1 years ago by ▴ 60 • written 19.1 years ago by ▴ 60
0
votes
3
replies
2.6k
views
what normalization method does mas5 use
Normalization GO affy gcrma plier Normalization GO affy gcrma plier
updated 19.8 years ago by ▴ 100 • written 19.8 years ago by ▴ 10
0
votes
5
replies
1.8k
views
RMA and justRMA error
Cancer cdf Biobase affy gcrma affyio Cancer cdf Biobase affy gcrma affyio
17.7 years ago Aedin Culhane ▴ 510
0
votes
3
replies
1.0k
views
gcrma problem
Microarray Cancer probe gcrma ASSIGN Microarray Cancer probe gcrma ASSIGN
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 120
0
votes
3
replies
938
views
GCRMA explained in words
Cancer probe gcrma Cancer probe gcrma
updated 18.2 years ago by ▴ 200 • written 18.2 years ago by ★ 2.0k
0
votes
3
replies
1.4k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 18.1 years ago by ▴ 70 • written 18.1 years ago by ★ 2.2k
0
votes
4
replies
1.4k
views
Question on afy/gcrma probe indexes
probe affy gcrma probe affy gcrma
updated 20.0 years ago by ▴ 220 • written 20.0 years ago by ▴ 20
0
votes
3
replies
1.0k
views
ad hoc tools for affy tiling arrays?
Normalization Preprocessing gcrma Normalization Preprocessing gcrma
updated 18.3 years ago by ▴ 310 • written 18.3 years ago by ★ 6.5k
0
votes
2
replies
795
views
gcrma
gcrma gcrma
updated 20.6 years ago by ★ 2.3k • written 20.6 years ago by ▴ 500
0
votes
3
replies
1.4k
views
GCRMA: feature request
GO Regression probe gcrma frma GO Regression probe gcrma frma
updated 13.3 years ago by ▴ 250 • written 13.3 years ago by ★ 3.9k
0
votes
2
replies
689
views
GCRMA with custom chips
probe gcrma probe gcrma
updated 18.5 years ago by 65k • written 18.5 years ago by ▴ 50
0
votes
3
replies
955
views
gcrma
mgu74av2 gcrma GENE.E mgu74av2 gcrma GENE.E
updated 20.6 years ago by ▴ 410 • written 20.7 years ago by ▴ 30
0
votes
2
replies
843
views
GCRMA, identical normalized values from 3 replicates
affy gcrma affy gcrma
updated 18.7 years ago by ▴ 200 • written 18.7 years ago by ▴ 810
0
votes
2
replies
1.6k
views
gcRMA and normalization
Normalization gcrma Normalization gcrma
updated 18.7 years ago by ▴ 200 • written 18.7 years ago by ▴ 210
0
votes
2
replies
1.1k
views
GCRMA error
gcrma gcrma
19.2 years ago Dion Whitehead ▴ 50
0
votes
2
replies
1.1k
views
iterative gcrma on 92 slides?
Normalization mgu74av2 gcrma PROcess Normalization mgu74av2 gcrma PROcess
updated 20.3 years ago by ▴ 130 • written 20.3 years ago by ★ 1.4k
0
votes
3
replies
929
views
gcrma
gcrma gcrma
19.3 years ago Lana Schaffer ★ 1.3k
0
votes
2
replies
1.1k
views
SE in RMA and GCRMA
gcrma gcrma
updated 19.6 years ago by ▴ 410 • written 19.6 years ago by ▴ 120
0
votes
2
replies
863
views
RMA question
gcrma gcrma
updated 20.7 years ago by ★ 2.3k • written 20.7 years ago by ▴ 720
0
votes
8
replies
1.4k
views
gcrma output id
affy gcrma affy gcrma
19.5 years ago Dianjing Guo ▴ 90
0
votes
2
replies
897
views
Cannot find hgu133aprobe package
gcrma gcrma
updated 20.1 years ago by ▴ 310 • written 20.1 years ago by ▴ 250
50 results • Page 1 of 1
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Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Answer: fgsea significant result by ATpoint ★ 4.1k
Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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