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geneanswers
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NCI pathways to graphNEL
Pathways
graph
Rredland
GeneAnswers
Pathways
graph
Rredland
GeneAnswers
13.3 years ago
laurent jacob
▴ 100
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2
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1.2k
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question about xvfb-run GeneAnswers
GO
GeneAnswers
GO
GeneAnswers
updated 12.6 years ago by
James W. MacDonald
65k • written 12.6 years ago by
Ou, Jianhong
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2
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1.1k
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Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 11.2 years ago by
Marc Carlson
★ 7.2k • written 11.2 years ago by
Jose M Garcia Manteiga
▴ 310
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GeneAnswer for bacteria metagenomes
geneanswers
metagenome
kegg
updated 7.8 years ago by
Guangchuang Yu
★ 1.2k • written 9.5 years ago by
francesca.defilippis
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Error running GeneAnswers and Rgraphviz
Rgraphviz
GeneAnswers
Rgraphviz
GeneAnswers
updated 13.3 years ago by
Manca Marco PATH
▴ 340 • written 13.3 years ago by
john herbert
▴ 10
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categories can not be recognized in Bioconductor/GeneAnswers
geneanswers
updated 7.4 years ago by
Gordon Smyth
50k • written 7.4 years ago by
emiliomastriani
• 0
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Re: GenesAnswers for Arabidopsis!
GeneAnswers
annotation
Arabidopsis
GO
8.9 years ago
lhuang7
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Pie chart
GO
GeneAnswers
GO
GeneAnswers
12.6 years ago
Guest User
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question about getGOList in GeneAnswers
GO
GeneAnswers
GO
GeneAnswers
12.1 years ago
Zhi Zhang
▴ 70
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help ith GeneAnswers / annotation package
Annotation
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oligo
GeneAnswers
Annotation
GO
oligo
GeneAnswers
11.5 years ago
Ingrid Mercier
▴ 60
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[Geneanswers] About the meaning of colours in networks
Network
GeneAnswers
Network
GeneAnswers
11.5 years ago
Enrico Ferrero
▴ 10
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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