Bioconductor Genesetcollection

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GSEABase annotation gsea gsva GeneSetCollection

updated 4.6 years ago by Robert Castelo ★ 3.4k • written 4.6 years ago by rocanja ▴ 60

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gseabase msigdb genesetcollection Tutorial

written 6.4 years ago by t.kuilman ▴ 170

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Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160

It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…

Comment: makeContrastsDream for Interaction by gabriel.hoffman ▴ 160

The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…

Answer: DESeq2 sizefactors counfounded with biological treatment by James W. MacDonald 67k

Your question is off-topic for this site, which is primarily intended to help people with technical issues with Bioconductor packages rathe…

Comment: Epic v2 Annotation CpG_maf source? by Meghan • 0

Thank you, so much, for this reply!

Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by remi-xavier.coux ▴ 10

That indeed worked, thanks a lot for the help (and for karyoploteR)

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Answer: Epic v2 Annotation CpG_maf source?

Answer: bioconductor packages on bioconda

Filtering low variance genes for WGCNA

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Popular Question to Hans-Ulrich Klein ▴ 330