Bioconductor Geneticsped

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genetics GeneticsPed Genetics

13 months ago Gülsüm • 0

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Sequencing Genetics GeneticsPed statistics

4.0 years ago António Miguel de Jesus Domingues ▴ 510

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Genetics GeneticsPed Genetics GeneticsPed

updated 11.5 years ago by Dan Tenenbaum ★ 8.2k • written 11.4 years ago by Liz Hare ▴ 30

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Genetics GeneticsPed Genetics GeneticsPed

updated 16.2 years ago by Vincent J. Carey, Jr. 6.7k • written 16.2 years ago by Paolo Innocenti ▴ 320

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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