Bioconductor Genomic

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7.2k

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genomic AnnotationHub GenomicRanges org.Hs.eg.db

5.2 years ago • updated 5.0 years ago rohitsatyam102 ▴ 20

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2.2k

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dnacopy dnaseq genomic cn.mops cnv

updated 7.6 years ago by Günter Klambauer ▴ 540 • written 7.6 years ago by Cased • 0

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2.1k

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IRanges GenomicRanges

updated 5.2 years ago by James W. MacDonald 68k • written 5.2 years ago by kalamari • 0

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1.6k

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GenomicRanges Genomic

4.5 years ago Daniel Cameron ▴ 40

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computational genomic big data bioinformatics Job

6.7 years ago jmaanaki • 0

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1.0k

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genomic EpiDISH

updated 3.1 years ago by shijieczheng • 0 • written 3.1 years ago by bony.dekumar ▴ 10

6 results • Page 1 of 1

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Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160

This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…

Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

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A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

Comment: Are transformed values from rlog /vst log2 normalized counts?

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Popular Question to Peter Hickey ▴ 760