Showing : dnacopy • reset
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436
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NAs in tabular output from DNAcopy
Bioconductor DNAcopy
3 months ago NewtoBioconductor • 0
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0
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406
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do DNAcopy do copy number segmentation need separate between tumor samples and mormal samples
DNAcopy
23 months ago xingyu • 0
0
votes
1
reply
1.7k
views
BiocManager::install("DNAcopy") failed to install in r
DNAcopy R
updated 2.1 years ago by ★ 6.2k • written 2.1 years ago by • 0
0
votes
11
replies
1.3k
views
Create `Copy Number Array' Data Object error
DNAcopy
3.0 years ago El • 0
0
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3
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1.5k
views
"genomdat must be numeric"error in DNAcopy Package (Solved)
DNAcopy Varscan
updated 3.0 years ago by • 0 • written 5.8 years ago by • 0
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0
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528
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don't get an output of wigtoRangedData's function HMMcopy Package for detect CNV
HMMcopy DNAcopy
3.0 years ago El • 0
2
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3
replies
1.3k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 5.4 years ago by ▴ 540 • written 5.4 years ago by • 0
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1
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2.2k
views
change plot title in DNAcopy multiple plot.type="s"
DNAcopy
updated 6.1 years ago by ▴ 670 • written 6.1 years ago by ▴ 60
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0
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685
views
plot multiple chromosomes from plot.type="c" to PDF files automatically in RStudio (RMD document)
dnacopy
6.1 years ago Stephane Plaisance | VIB | ▴ 60
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3
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1.3k
views
wrong output of DNAcopy::segment() for chr. with empty copy number data
DNAcopy dnacopy
6.3 years ago Alexandre Kuhn ▴ 20
0
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3
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1.3k
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Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA Cancer dnacopy segmentation
updated 6.4 years ago by ▴ 130 • written 6.4 years ago by • 0
1
vote
2
replies
1.2k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy segmentation CBS
updated 6.8 years ago by ▴ 30 • written 6.8 years ago by ▴ 10
2
votes
4
replies
2.1k
views
Visualizing CopywriteR's segmentation output in IGV
copywriter dnacopy
updated 7.8 years ago by 170 • written 7.8 years ago by • 0
0
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2
replies
1.0k
views
could not find function "DNAcopy"
dnacopy
updated 7.8 years ago by 25k • written 7.8 years ago by • 0
0
votes
1
reply
1.4k
views
CNAnorm ploidy help
CNAnorm DNAcopy
updated 8.0 years ago by • 0 • written 8.0 years ago by ▴ 40
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votes
0
replies
836
views
Get data frame of CNV calls from Seglist object
seglist snapcgh dnacopy
8.3 years ago Cian Murphy ▴ 40
0
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1
reply
1.2k
views
"genomdat must be numeric" error form DNACopy package
software error dnacopy crlmm
updated 8.4 years ago by 64k • written 8.5 years ago by • 0
0
votes
0
replies
1.3k
views
DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
8.9 years ago giovanni.dario • 0
1
vote
1
reply
1.1k
views
Installation of DNAcopy was absolutly done in R2.15?
installation dnacopy
8.9 years ago vov-x • 0
0
votes
4
replies
1.7k
views
DNACopy Question what is passed to the maploc argument.
DNAcopy DNAcopy
updated 9.3 years ago by ★ 6.8k • written 9.3 years ago by ▴ 30
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0
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945
views
DNA Copy CNA function , what do you pass to maploc argument?
DNAcopy DNAcopy
9.3 years ago Nikolas Balanis ▴ 30
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3
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3.3k
views
Error installing impute package
GUI impute DNAcopy GUI impute DNAcopy
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by ▴ 80
0
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0
replies
1.1k
views
CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
10.3 years ago Guest User ★ 12k
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votes
0
replies
1.1k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
10.4 years ago Guest User ★ 12k
0
votes
1
reply
1.5k
views
Error in sort(abs(diff(genomdat)))[1:n.keep]
DNAcopy DNAcopy
updated 10.5 years ago by ▴ 40 • written 10.5 years ago by ★ 12k
0
votes
3
replies
1.3k
views
Error installing (some) Bioconductor packages on Mac OSX under R-3.0.0?
GUI impute DNAcopy GUI impute DNAcopy
updated 10.6 years ago by ★ 8.2k • written 10.6 years ago by ★ 2.8k
0
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1
reply
1.3k
views
Can we use DNAcopy to analyse Copy Number Viaration using next generation sequencing data generated by eigher Ion PGM or Illumina MiSeq
Sequencing DNAcopy Sequencing DNAcopy
updated 10.9 years ago by ▴ 210 • written 10.9 years ago by ★ 12k
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5
replies
1.6k
views
bioconductor on EMR / mapreduce
DNAcopy DNAcopy
updated 11.2 years ago by ★ 8.2k • written 11.2 years ago by ▴ 70
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1
reply
1.5k
views
DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
11.7 years ago Ekta Jain ▴ 370
0
votes
1
reply
1.0k
views
DNAcopy for CNV in SNP Affy 6.0
DNAcopy DNAcopy
updated 11.7 years ago by 6.7k • written 11.7 years ago by ▴ 370
0
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0
replies
954
views
aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
11.7 years ago Emilie Lalonde ▴ 10
0
votes
1
reply
1.1k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 11.9 years ago by 25k • written 11.9 years ago by ▴ 280
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votes
2
replies
1.1k
views
questions on cghMCR package
DNAcopy cghMCR DNAcopy cghMCR
updated 11.9 years ago by 25k • written 11.9 years ago by ▴ 280
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0
replies
926
views
Fwd: seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
11.9 years ago nac ▴ 280
0
votes
0
replies
888
views
seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
12.0 years ago nac ▴ 280
0
votes
0
replies
924
views
Help on cghMCR units of gapAllowed
DNAcopy cghMCR DNAcopy cghMCR
12.0 years ago nac ▴ 280
0
votes
2
replies
1.4k
views
Tuning segment() in DNAcopy package to get more segments on each chromosome
DNAcopy UNDO DNAcopy UNDO
updated 12.1 years ago by 21k • written 12.1 years ago by ▴ 110
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0
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1.1k
views
cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
PROcess DNAcopy cghMCR PROcess DNAcopy cghMCR
12.2 years ago viritha kaza ▴ 580
0
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1
reply
1.2k
views
cghMCR package:Is it possible to find MCR by not using DNAcopy object?
DNAcopy cghMCR DNAcopy cghMCR
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ▴ 580
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votes
1
reply
911
views
DNAcopy segment() Infinite Loop
DNAcopy DNAcopy
updated 12.4 years ago by ▴ 40 • written 12.4 years ago by ★ 1.5k
2
votes
1
reply
1.4k
views
DNAcopy
DNAcopy copynumber DNAcopy copynumber
updated 12.5 years ago by 21k • written 12.5 years ago by ▴ 140
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2
replies
1.2k
views
DNA copy ploting function
probe DNAcopy probe DNAcopy
12.5 years ago nac ▴ 280
0
votes
1
reply
792
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
updated 12.5 years ago by 13k • written 12.5 years ago by ▴ 280
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0
replies
684
views
[Fwd: Problem with DNAcopy plot function ??]
DNAcopy DNAcopy
12.5 years ago nac ▴ 280
0
votes
0
replies
764
views
How to get defenitive Amp/del/nochange using DNAcopy package?
graph DNAcopy graph DNAcopy
12.6 years ago Chiho Kwon ▴ 10
0
votes
1
reply
769
views
DNAcopy installation error
DNAcopy DNAcopy
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 10
0
votes
0
replies
991
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
13.8 years ago Daniel Rico ▴ 110
0
votes
0
replies
851
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
13.8 years ago Anguraj Sadanandam ▴ 10
0
votes
2
replies
941
views
Reproducibility of DNAcopy segmentation
DNAcopy DNAcopy
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 20
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votes
0
replies
1.1k
views
cghMCR package - Jianhua Zhang
DNAcopy cghMCR DNAcopy cghMCR
13.9 years ago Luz G Alonso ▴ 20
50 results • Page 1 of 1
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Replies
Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0
Yes I see that. So, to expand, if strong grouping IS seen, then the ```~condition``` approach is not appropriate, as will likely lead to po…
Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0
This seems a very odd response to what seemed to be a very reasonable question
Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0
I'm not using Chat GPT. I've been discussing at length this issue of having multiple samples derived from the same patients with many colle…
Comment: DESeq2 - groups with biological replicates from the same patient by Kevin Blighe 3.9k
No, it's more important to solve broader issues. >10 million children go hungry every day in the USA. Controlling for Type 1 error will not…
Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0
I do not follow. Surely it is important to control for type I error?
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