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big data
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898
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Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
NGS
R
statistics
genomics
big data
Job
3.5 years ago • updated 2.7 years ago
Luo Weijun
★ 1.5k
0
votes
0
replies
422
views
Job:
Data Manager - BC Cancer Research Center, Vancouver BC
computational
genomic
big data
bioinformatics
Job
3.2 years ago
jmaanaki
• 0
0
votes
0
replies
524
views
Job:
Postdoctoral positions in drug discovery and genome data science
computational biology
biostatistics
big data
data science
drug discovery
Job
3.5 years ago
Thomas Girke
★ 1.7k
1
vote
2
replies
480
views
How to handle big data sets (>10GB) in Bioconductor packages?
big data
methylmix
memory problem
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
perdedorium
• 0
1
vote
1
reply
584
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
4.3 years ago
hauken_heyken
▴ 80
0
votes
0
replies
659
views
What is the recommended method for running WGCNA on large metatranscriptomic dataset?
wgcna
transcriptome
big data
metagenomics
gene expression
4.5 years ago
jol.espinoz
▴ 40
3
votes
1
reply
932
views
AnnotationHub: confusing pValue/qValue for (some) Roadmap records
roadmap project
annotationhub
epigenomics
big data
updated 6.3 years ago by
Valerie Obenchain
★ 6.7k • written 6.3 years ago by
kevin.rue
▴ 300
0
votes
0
replies
1.7k
views
Job:
Postdoctoral Research Associate Position- Harvard Medical School (Probabilistic Algorithms and Software for Biomedical Big Data)
Probabilistic Algorithms
Big Data
Job
7.3 years ago
Doe, Aimee
▴ 40
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Comment: OPLS-DA: confidence interval for accuracy metric
by
etienne.thevenot
▴ 20
- The bootstrapping approach can be used to compute the CIs: see here for an example: Mendez et al. (2019). « A comparative evaluation …
Comment: Data input for aracne2regulon function in viper package
by
xlal
• 0
You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…
Comment: unable to install.packages("spatialLIBD")
by
Leonardo Collado Torres
▴ 1000
All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…
Answer: how to use Rsamtools to parse extra fields from STAR alignment
by
Martin Morgan
25k
The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Delta._.43
▴ 10
Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…
Votes
Answer: spot- vs cell-level data access
Answer: unable to install.packages("spatialLIBD")
Comment: unable to install.packages("spatialLIBD")
error running UniProt.ws
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
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▴ 1000
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