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Showing :
getGEO
•
reset
2
votes
6
replies
1.5k
views
error reading GSE using getGEO()
r
geo
getgeo
5.8 years ago
jaleh.amo
• 0
2
votes
2
replies
1.2k
views
getGEO from GEOquery doesn't return probesets
geoquery
getgeo
probeset
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
dnedveck
• 0
3
votes
2
replies
3.1k
views
getGEO error when trying to download a series matrix file
GEOquery
getGEO
6.1 years ago
rubi
▴ 110
3
votes
4
replies
1.3k
views
getGEO Error: Duplicate identifiers for rows
geoquery
getgeo
updated 6.2 years ago by
Sean Davis
21k • written 6.2 years ago by
umahajan
▴ 10
3
votes
11
replies
4.0k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 6.3 years ago by
Sean Davis
21k • written 7.1 years ago by
jblack29
• 0
3
votes
1
reply
1.2k
views
getGEO Error: Duplicate identifiers for rows
getGEO
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
cg
▴ 10
0
votes
2
replies
1.7k
views
Error in GEOquery
geoquery
getgeo
R
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
rk489
• 0
2
votes
2
replies
1.6k
views
Problem with GEOquery R package in Windows when trying to download specific GEO processed data
geoquery
affymetrix microarrays
windows8
getGEO
updated 7.1 years ago by
Sean Davis
21k • written 7.1 years ago by
svlachavas
▴ 830
2
votes
2
replies
2.1k
views
GEOquery error in downloading SOFT files
geoquery
getgeo
GEO
7.5 years ago
hzc363
▴ 20
0
votes
2
replies
2.0k
views
Why getGEO returns an expressionset with zero features ?
getgeo
8.1 years ago
xishan78
• 0
0
votes
0
replies
954
views
getGEO is taking too long time for a file that is already locally cached
getgeo
r
8.2 years ago
alptaciroglu
▴ 50
0
votes
1
reply
3.6k
views
getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
getGEO
8.2 years ago
maedakus
▴ 10
2
votes
4
replies
1.6k
views
GEOquery: Shifted data columns in phenotype data
geoquery
getgeo
8.3 years ago
rfb
• 0
2
votes
2
replies
1.8k
views
getGEO error
getgeo
geoquery
updated 8.3 years ago by
Gordon Smyth
50k • written 8.3 years ago by
maedakus
▴ 10
4
votes
8
replies
7.0k
views
getGEO - cannot Open URL issue
getGEO
R
GEOquery
8.6 years ago
alptaciroglu
▴ 50
2
votes
4
replies
2.9k
views
getGEO function not identifying local file
geoquery
getGEO
8.7 years ago
Prasanth
▴ 20
16 results • Page
1 of 1
Recent ...
Replies
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Votes
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
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