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Showing :
getgeo
•
reset
2
votes
6
replies
729
views
error reading GSE using getGEO()
r
geo
getgeo
3.8 years ago
jaleh.amo
• 0
2
votes
2
replies
745
views
getGEO from GEOquery doesn't return probesets
geoquery
getgeo
probeset
updated 4.1 years ago by
James W. MacDonald
59k • written 4.1 years ago by
dnedveck
• 0
3
votes
2
replies
1.8k
views
getGEO error when trying to download a series matrix file
GEOquery
getGEO
4.2 years ago
rubi
▴ 100
3
votes
4
replies
841
views
getGEO Error: Duplicate identifiers for rows
geoquery
getgeo
updated 4.2 years ago by
Sean Davis
21k • written 4.2 years ago by
umahajan
▴ 10
3
votes
11
replies
2.3k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 4.3 years ago by
Sean Davis
21k • written 5.1 years ago by
jblack29
• 0
3
votes
1
reply
858
views
getGEO Error: Duplicate identifiers for rows
getGEO
updated 4.5 years ago by
James W. MacDonald
59k • written 4.5 years ago by
cg
▴ 10
0
votes
2
replies
1.3k
views
Error in GEOquery
geoquery
getgeo
R
updated 5.1 years ago by
James W. MacDonald
59k • written 5.1 years ago by
rk489
• 0
2
votes
2
replies
1.0k
views
Problem with GEOquery R package in Windows when trying to download specific GEO processed data
geoquery
affymetrix microarrays
windows8
getGEO
updated 5.1 years ago by
Sean Davis
21k • written 5.1 years ago by
svlachavas
▴ 780
2
votes
2
replies
1.1k
views
GEOquery error in downloading SOFT files
geoquery
getgeo
GEO
5.5 years ago
hzc363
▴ 20
0
votes
2
replies
1.3k
views
Why getGEO returns an expressionset with zero features ?
getgeo
6.2 years ago
xishan78
• 0
0
votes
0
replies
625
views
getGEO is taking too long time for a file that is already locally cached
getgeo
r
6.2 years ago
alptaciroglu
▴ 50
0
votes
1
reply
2.3k
views
getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
getGEO
6.3 years ago
maedakus
▴ 10
2
votes
4
replies
1.0k
views
GEOquery: Shifted data columns in phenotype data
geoquery
getgeo
6.3 years ago
rfb
• 0
2
votes
2
replies
1.4k
views
getGEO error
getgeo
geoquery
updated 6.4 years ago by
Gordon Smyth
45k • written 6.4 years ago by
maedakus
▴ 10
4
votes
8
replies
5.4k
views
getGEO - cannot Open URL issue
getGEO
R
GEOquery
6.6 years ago
alptaciroglu
▴ 50
2
votes
4
replies
2.0k
views
getGEO function not identifying local file
geoquery
getGEO
6.7 years ago
Prasanth
▴ 20
16 results • Page
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Replies
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
James W. MacDonald
59k
We have progressed past the point where I show you how to do things using Bioconductor packages, and into the realm where I start telling y…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! As your mentioned here, 12-15 means cutoff value about 4? Could I select the reflection point as the "point" that starts to ha…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
James W. MacDonald
59k
It's a non-scientific selection. The Nonspecific probes are meant to be sequences that are not found in nature, so any binding is due to cr…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks for your excellent reply sir! But there are still some points confused me. (1).dbGetQuery get 93 kinds of probes. Would be okay for …
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
by
Kevin Blighe
3.5k
Great! problem solved, then?
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Comment: Quantile Normalization after rma or not?
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: How to best visualize multi-level transcriptomics experiment data?
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James W. MacDonald
59k
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Rory Stark
★ 4.4k
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Gyan Prakash Mishra
• 0
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ATpoint
★ 1.2k
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Gordon Smyth
45k
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