Bioconductor GetGEO

Showing : getGEO • reset

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r geo getgeo

7.6 years ago jaleh.amo • 0

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geoquery getgeo probeset

updated 7.9 years ago by James W. MacDonald 68k • written 7.9 years ago by dnedveck • 0

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GEOquery getGEO

7.9 years ago rubi ▴ 110

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geoquery getgeo

updated 8.0 years ago by Sean Davis 21k • written 8.0 years ago by umahajan ▴ 10

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geoquery error getgeo microarray geo

updated 8.1 years ago by Sean Davis 21k • written 8.8 years ago by jblack29 • 0

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getGEO

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by cg ▴ 10

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geoquery getgeo R

updated 8.9 years ago by James W. MacDonald 68k • written 8.9 years ago by rk489 • 0

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geoquery affymetrix microarrays windows8 getGEO

updated 8.9 years ago by Sean Davis 21k • written 8.9 years ago by svlachavas ▴ 840

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geoquery getgeo GEO

9.2 years ago hzc363 ▴ 20

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9.9 years ago xishan78 • 0

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9.9 years ago alptaciroglu ▴ 50

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getGEO

10.0 years ago maedakus ▴ 10

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geoquery getgeo

10.1 years ago rfb • 0

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getgeo geoquery

updated 10.1 years ago by Gordon Smyth 53k • written 10.1 years ago by maedakus ▴ 10

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getGEO R GEOquery

10.3 years ago alptaciroglu ▴ 50

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geoquery getGEO

10.4 years ago Prasanth ▴ 20

16 results • Page 1 of 1

Recent ...

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Awards • All

Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760