Bioconductor Ggplot

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735

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ggplot

updated 13 months ago by Konstantinos Yeles ▴ 80 • written 13 months ago by R_diot • 0

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436

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ggplot dendogram ggtreeExtra clustree ggtree

13 months ago christian.dina • 0

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578

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TCseq ggplot

23 months ago jochen • 0

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1.8k

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ggplot

2.4 years ago nattzy94 ▴ 20

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575

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ggplot

updated 3.0 years ago by Kevin Blighe ★ 3.9k • written 3.0 years ago by abhisek001 • 0

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666

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ggplot2 ggplot cmplot

5.1 years ago gens8094 • 0

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653

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ggplot cmplot ggplot2

5.2 years ago gens8094 • 0

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21k

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edger ggplot

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by mictadlo ▴ 10

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1.8k

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edger ggplot

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by mictadlo ▴ 10

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1.5k

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ggplot2 ggplot plot

updated 8.3 years ago by James W. MacDonald 65k • written 8.3 years ago by alptaciroglu ▴ 50

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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