Bioconductor Ggplot

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748

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ggplot

updated 13 months ago by Konstantinos Yeles ▴ 80 • written 13 months ago by R_diot • 0

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441

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ggplot dendogram ggtreeExtra clustree ggtree

14 months ago christian.dina • 0

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587

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TCseq ggplot

23 months ago jochen • 0

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1.8k

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ggplot

2.4 years ago nattzy94 ▴ 20

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582

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ggplot

updated 3.1 years ago by Kevin Blighe ★ 3.9k • written 3.1 years ago by abhisek001 • 0

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667

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ggplot2 ggplot cmplot

5.1 years ago gens8094 • 0

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656

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ggplot cmplot ggplot2

5.2 years ago gens8094 • 0

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22k

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edger ggplot

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by mictadlo ▴ 10

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1.8k

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edger ggplot

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by mictadlo ▴ 10

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1.5k

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ggplot2 ggplot plot

updated 8.3 years ago by James W. MacDonald 66k • written 8.3 years ago by alptaciroglu ▴ 50

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Comment: recount3 problem downloading data from source sra by PABLO ANTONIO • 0

Hello Leonardo, Thanks for commenting on possible solutions. I noticed comparing your session info that I was using the previous version o…

Comment: seqlevelsStyle() not working by websterdelacruz2087055 • 0

Specify the new URL new_url <- "https://hgdownload2.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz" Use the new URL to download th…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Yes, thank you. I have another error now, may you please guide me. here is the code that I used till using vep: ```r # bam_path <- "~/pat…

Comment: slingshot: error with plot3d.SlingshotDataSet by Happiness • 0

Hi please i am encountering similar issue how did you fix it. Here is the code: ## Run Slingshot p3.neuron.sds <- slingshot(Embeddings(…

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by mohammedtoufiq91 ▴ 10

https://support.bioconductor.org/u/5106/ thank you very much.

Votes

Answer: Multiple factor DSEq2 result generates weird volcano plot

DESeq2 for single cell pseudobulk processing

Simultaneously adding two different covariates in the model gives error in DESeq2.

How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: recount3 problem downloading data from source sra

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Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10