Bioconductor Girafe

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2.6k

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BSgenome hexbin BSgenome IRanges genomeIntervals GenomicRanges girafe Rsamtools HiTC HiTC

updated 11.2 years ago by Dan Tenenbaum ★ 8.2k • written 11.2 years ago by Wim Kreinen ▴ 100

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866

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Annotation girafe Annotation girafe

updated 12.6 years ago by Joern Toedling ▴ 50 • written 12.6 years ago by karlerhard@berkeley.edu ▴ 60

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1.4k

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girafe girafe

updated 12.9 years ago by Sean Davis 21k • written 12.9 years ago by chunjiang he ▴ 80

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938

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girafe girafe

updated 13.0 years ago by Joern Toedling ▴ 10 • written 13.0 years ago by karlerhard@berkeley.edu ▴ 60

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873

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Annotation girafe Annotation girafe

updated 13.1 years ago by Hervé Pagès 16k • written 13.1 years ago by karlerhard@berkeley.edu ▴ 60

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1.4k

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edgeR girafe edgeR girafe

updated 13.1 years ago by Hervé Pagès 16k • written 13.1 years ago by karlerhard@berkeley.edu ▴ 60

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1.3k

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edgeR girafe edgeR girafe

updated 13.1 years ago by Chris Fields ▴ 90 • written 13.1 years ago by karlerhard@berkeley.edu ▴ 60

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858

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Alignment annotate girafe Alignment annotate girafe

updated 13.9 years ago by Joern Toedling ▴ 450 • written 13.9 years ago by Andreia Fonseca ▴ 810

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1.3k

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Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe

updated 13.9 years ago by Joern Toedling ▴ 450 • written 13.9 years ago by Andreia Fonseca ▴ 810

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1.1k

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girafe girafe

updated 13.9 years ago by Steve Lianoglou ★ 13k • written 13.9 years ago by Andreia Fonseca ▴ 810

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Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>

Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0

Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…

Answer: Differential gene expression analysis results by ATpoint ★ 4.1k

Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…

Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.