Showing : gofuncr • reset
1
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GOfuncR fails to build on Mac OS
GOfuncR
updated 10 months ago by ▴ 10 • written 15 months ago by ▴ 30
0
votes
1
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747
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Gene enrichment analysis
analysis R GOfuncR
updated 18 months ago by ▴ 760 • written 18 months ago by • 0
0
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1
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887
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I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 2.2 years ago by ▴ 780 • written 2.2 years ago by • 0
0
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2
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1.1k
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question about the refined outputs from GOfuncR package
GOfuncR
3.2 years ago • updated 2.5 years ago capricygcapricyg ▴ 10
0
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2
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972
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Graphically Represent p-values from plot_annot_score in package GOfuncR
GOfuncR plot_anno_scores plot_stats
updated 6.2 years ago by • 0 • written 6.2 years ago by ▴ 40
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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k
> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…
Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80
Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k
Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…
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C: edgeR and lack of counts ID on CPM matrix
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A: importing RSEM data into DESeq2
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A: Using RSEM reads for DESeq2
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