Bioconductor Goterm

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GOTerm

2.8 years ago Amazing570 • 0

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945

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RDAVIDWebService Gene Ontology GOTerm biomaRt

4.4 years ago ra711 • 0

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743

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biomart goterm

updated 4.7 years ago by Mike Smith ★ 6.6k • written 4.7 years ago by A • 0

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deseq2 goterm

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by shaunnak • 0

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1.4k

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go goseq goterm category

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by Juan • 0

5 results • Page 1 of 1

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Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Hervé Pagès 16k

> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…

Comment: ISO a solution to rank-order introns by transcript by mat149 ▴ 80

Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…

Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30

Thank you! This is actually quite close to my real dataset. I simplified the names to make it easier as an example, but I have now correcte…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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