Bioconductor Group

Showing : group • reset

votes

replies

5.6k

views

R granges subsett grangeslist group

updated 7.7 years ago by Mike Smith ★ 6.5k • written 7.7 years ago by RichardJActon ▴ 50

votes

replies

1.1k

views

deseq2 group

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by pokharel.kisun • 0

votes

replies

3.4k

views

egder dgelist group rnaseq

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by fawazfebin ▴ 60

votes

replies

2.6k

views

deseq2 multiple factor design group

updated 8.1 years ago by Michael Love 42k • written 8.1 years ago by mat.lesche ▴ 110

votes

replies

2.9k

views

iranges findoverlaps intersect group

8.8 years ago pesquivel • 0

5 results • Page 1 of 1

Recent ...

Replies

Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet by Gordon Smyth 51k

Thanks very much for the reproducible example. The bug has been fixed now in edgeR 4.3.17 on the Bioconductor developmental repository.

Answer: Highly DE genes but small count difference within conditions by h1vu81gcd7 • 0

It sounds like you're diving deep into DE analysis, comparing condition1 with the control using a solid design. However, the elevated padj …

Comment: dmpFinder for other objects by neyousha • 0

Hi James, Thank you a lot for responding. Hmm... so do you think if have matrix average_beta below: ![average_beta_matrix][1] [1]:…

Comment: DEseq2 time-series design by Michael Love 42k

Would you mind making a new post -- it's just easier for threaded content. And feel free to post any particular code or images you need.

Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by Yang Liao ▴ 440

Thanks for taking the time to report the bug! The provided `Valgrind` report is very helpful and suggests the issue lies within the banded …

Votes

Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet

Answer: dmpFinder for other objects

GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: How to control batch effect if Group and batch are same?

Awards • All