Biostar Dgelist

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126

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factors edgeR setup DGELIst

updated 10 weeks ago by Gordon Smyth 43k • written 11 weeks ago by Alex • 0

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replies

480

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edger DGElist

updated 2.3 years ago by Gordon Smyth 43k • written 2.3 years ago by naser.sadri • 0

votes

replies

785

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dgelist edger RnaSeqGeneEdgeRQL

updated 3.0 years ago by Gordon Smyth 43k • written 3.0 years ago by Kevin • 0

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replies

674

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edgeR summarizedexperiment dgelist

3.3 years ago aljoscha.leusmann • 0

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339

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tree bootstrap dgelist plotmds

3.4 years ago Larry K. • 0

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917

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edger dgelist NA egsea

updated 3.4 years ago by Gordon Smyth 43k • written 3.4 years ago by belmore • 0

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1.9k

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edger DGEList org.hs.eg.db gene annotation

updated 3.7 years ago by Aaron Lun ★ 27k • written 3.7 years ago by svlachavas ▴ 780

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1.2k

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egder dgelist group rnaseq

updated 3.7 years ago by Aaron Lun ★ 27k • written 3.7 years ago by fawazfebin ▴ 30

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1.3k

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DGElist filter edgeR

updated 4.1 years ago by Gordon Smyth 43k • written 4.1 years ago by alakatos ▴ 110

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991

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edger raw reads TMM normalised values DGEList differential gene expression

updated 5.0 years ago by Steve Lianoglou 13k • written 5.0 years ago by benedict.ng ▴ 10

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3.8k

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edger subsetting dgelist

updated 5.0 years ago by Gordon Smyth 43k • written 5.0 years ago by mnaymik ▴ 10

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14k

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edgeR row.names DGEList

6.5 years ago ccheung • 0

12 results • Page 1 of 1

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Comment: DESeq2 - understanding intercept and contrasts by sarah-spie • 0

Thank you, dear Michael, and thank you for being so active in this forum in general! Could you have a look at this line, in which I wand to…

Answer: tximeta countsFromAbundance for downstream analysis by Michael Love 33k

The counts will not be closely correlated to the TPM across genes, because the gene length is included in the gene count but not in the TPM…

Answer: DESeq2 - understanding intercept and contrasts by Michael Love 33k

For questions on setting up the statistical design and contrasts, I recommend to consult with a local statistician or someone familiar with…

Answer: Interaction terms and selection of coef in normal and shrunk results by Michael Love 33k

Please see the diagram in the vignette on interactions, but for further questions on setting up the design, I recommend to consult with a l…

Answer: about baseMean in DEseq2 by Michael Love 33k

More information about the columns is here: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#access-…

Votes

A: plotPCA - how to add labels to a PCA plot

Answer: Can't produce a generegiontrack from my txdb anymore

Answer: how to get genomic coordinates from an MIndex object

Answer: How to sort out error in gdcCEAnalysis function of GDCRNATools R package?

Awards • All

Scholar to Michael Lawrence 11k