Bioconductor Dgelist

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522

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DGEList edgeR

12 months ago prity6459 • 0

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872

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edgeR Bioconductor Dseq2 dgelist

updated 2.4 years ago by Gordon Smyth 52k • written 2.4 years ago by Fiona • 0

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1.2k

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factors edgeR setup DGELIst

updated 4.0 years ago by Gordon Smyth 52k • written 4.0 years ago by Alex • 0

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2.3k

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edger DGElist

updated 6.1 years ago by Gordon Smyth 52k • written 6.1 years ago by naser.sadri • 0

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2.1k

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dgelist edger RnaSeqGeneEdgeRQL

updated 6.7 years ago by Gordon Smyth 52k • written 6.7 years ago by Kevin • 0

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2.7k

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edgeR summarizedexperiment dgelist

7.0 years ago aljoscha.leusmann • 0

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1.2k

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tree bootstrap dgelist plotmds

7.1 years ago Larry K. • 0

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2.6k

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edger dgelist NA egsea

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by belmore • 0

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4.2k

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edger DGEList org.hs.eg.db gene annotation

updated 3.6 years ago by IIart.hubII • 0 • written 7.4 years ago by svlachavas ▴ 840

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3.7k

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egder dgelist group rnaseq

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by fawazfebin ▴ 60

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3.9k

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DGElist filter edgeR

updated 7.8 years ago by Gordon Smyth 52k • written 7.8 years ago by alakatos ▴ 130

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3.0k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 8.7 years ago by Steve Lianoglou ★ 13k • written 8.7 years ago by benedict.ng ▴ 30

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7.4k

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edger subsetting dgelist

updated 8.8 years ago by Gordon Smyth 52k • written 8.8 years ago by mnaymik ▴ 10

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21k

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edgeR row.names DGEList

10.2 years ago ccheung • 0

14 results • Page 1 of 1

Recent ...

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Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Votes

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

A: Contrasts & coefficients in limma

Answer: How to formulate 2 factor nested design in DESeq2

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