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guideseq
•
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0
votes
0
replies
433
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
17 months ago
StayM
• 0
0
votes
6
replies
1.6k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 3.4 years ago by
Julie Zhu
★ 4.3k • written 3.4 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
914
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 3.6 years ago by
Julie Zhu
★ 4.3k • written 3.6 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
666
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
3.6 years ago
sharvari gujja
▴ 40
0
votes
0
replies
667
views
GUIDEseq: read count for each offtarget
GUIDEseq
3.6 years ago
sharvari gujja
▴ 40
0
votes
0
replies
765
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
3.6 years ago
sharvari gujja
▴ 40
3
votes
1
reply
1.1k
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 4.8 years ago by
Julie Zhu
★ 4.3k • written 4.8 years ago by
David Kuo
• 0
0
votes
2
replies
1.3k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 4.9 years ago by
Julie Zhu
★ 4.3k • written 4.9 years ago by
Tiffany
• 0
0
votes
4
replies
1.5k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 6.0 years ago by
Julie Zhu
★ 4.3k • written 6.0 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.3k
views
GUIDEseq BED input error
GUIDEseq
6.0 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.3k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 6.3 years ago by
Julie Zhu
★ 4.3k • written 6.3 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
996
views
GUIDEseq outputDir error
GUIDEseq
updated 6.3 years ago by
Julie Zhu
★ 4.3k • written 6.3 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.5k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 6.3 years ago by
Julie Zhu
★ 4.3k • written 6.3 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
959
views
GUIDEseq bam input
GUIDEseq
bam
updated 6.3 years ago by
Julie Zhu
★ 4.3k • written 6.3 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.4k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
8.1 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
2.0k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 8.3 years ago by
Julie Zhu
★ 4.3k • written 8.3 years ago by
aamir.mir
• 0
2
votes
1
reply
1.5k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 8.3 years ago by
Julie Zhu
★ 4.3k • written 8.3 years ago by
aamir.mir
• 0
17 results • Page
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Comment: Bioinformatician at the Lausanne University Hospital
by
eja.ger.m
• 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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4.2k
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Gordon Smyth
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