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guideseq
•
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0
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replies
323
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
8 months ago
StayM
• 0
0
votes
6
replies
1.4k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 2.7 years ago by
Julie Zhu
★ 4.3k • written 2.7 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
790
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 2.9 years ago by
Julie Zhu
★ 4.3k • written 2.9 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
500
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
2.9 years ago
sharvari gujja
▴ 40
0
votes
0
replies
553
views
GUIDEseq: read count for each offtarget
GUIDEseq
2.9 years ago
sharvari gujja
▴ 40
0
votes
0
replies
657
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
2.9 years ago
sharvari gujja
▴ 40
3
votes
1
reply
867
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 4.1 years ago by
Julie Zhu
★ 4.3k • written 4.1 years ago by
David Kuo
• 0
0
votes
2
replies
1.1k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 4.1 years ago by
Julie Zhu
★ 4.3k • written 4.1 years ago by
Tiffany
• 0
0
votes
4
replies
1.2k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 5.3 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.1k
views
GUIDEseq BED input error
GUIDEseq
5.3 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.2k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.6 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
866
views
GUIDEseq outputDir error
GUIDEseq
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.6 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.3k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.6 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
826
views
GUIDEseq bam input
GUIDEseq
bam
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.6 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.3k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
7.4 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
1.8k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 7.6 years ago by
Julie Zhu
★ 4.3k • written 7.6 years ago by
aamir.mir
• 0
2
votes
1
reply
1.3k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 7.6 years ago by
Julie Zhu
★ 4.3k • written 7.6 years ago by
aamir.mir
• 0
17 results • Page
1 of 1
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Replies
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
Joshua Llano
• 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta
by
GA
▴ 10
Thank you!
Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
by
ATpoint
★ 4.8k
If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species
by
Mike Smith
★ 6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
by
Gordon Smyth
52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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