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guideseq
•
reset
0
votes
0
replies
418
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
16 months ago
StayM
• 0
0
votes
6
replies
1.6k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 3.3 years ago by
Julie Zhu
★ 4.3k • written 3.3 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
892
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
653
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
3.5 years ago
sharvari gujja
▴ 40
0
votes
0
replies
653
views
GUIDEseq: read count for each offtarget
GUIDEseq
3.5 years ago
sharvari gujja
▴ 40
0
votes
0
replies
747
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
3.5 years ago
sharvari gujja
▴ 40
3
votes
1
reply
1.0k
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
David Kuo
• 0
0
votes
2
replies
1.3k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 4.8 years ago by
Julie Zhu
★ 4.3k • written 4.8 years ago by
Tiffany
• 0
0
votes
4
replies
1.5k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 5.9 years ago by
Julie Zhu
★ 4.3k • written 5.9 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.2k
views
GUIDEseq BED input error
GUIDEseq
5.9 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.3k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
975
views
GUIDEseq outputDir error
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.4k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
929
views
GUIDEseq bam input
GUIDEseq
bam
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.4k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
8.0 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
2.0k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
aamir.mir
• 0
2
votes
1
reply
1.5k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
aamir.mir
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: VariantAnnotation does escape = within header string quotes
by
Daniel Cameron
▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data
by
Alexander
• 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Comment: featureCounts -L: high unassigned:mapq fraction
by
eja.gssssssse.r.m
• 0
If you re looking to enjoy a fun mobile experience, the 3 patti vegas game offers a seamless way to play classic card games on your phone. …
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Kevin Blighe
★ 4.0k
Hello Matthew, Thanks for the detailed description-this sounds like a classic challenge in sncRNA analysis, where piRNAs (and other tsRN…
Answer: VariantAnnotation does escape = within header string quotes
by
Kevin Blighe
★ 4.0k
Hi, Thanks for the minimal reproduction - this is very clear and confirms a bug in `VariantAnnotation::writeVcf()`. The issue is that th…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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shepherl
4.2k
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James W. MacDonald
68k
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Daniel Cameron
▴ 40
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Peter Hickey
▴ 760
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edward.esiribloom
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