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guideseq
•
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0
votes
0
replies
418
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
16 months ago
StayM
• 0
0
votes
6
replies
1.6k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 3.3 years ago by
Julie Zhu
★ 4.3k • written 3.3 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
892
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
653
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
3.5 years ago
sharvari gujja
▴ 40
0
votes
0
replies
653
views
GUIDEseq: read count for each offtarget
GUIDEseq
3.5 years ago
sharvari gujja
▴ 40
0
votes
0
replies
748
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
3.5 years ago
sharvari gujja
▴ 40
3
votes
1
reply
1.0k
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
David Kuo
• 0
0
votes
2
replies
1.3k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 4.8 years ago by
Julie Zhu
★ 4.3k • written 4.8 years ago by
Tiffany
• 0
0
votes
4
replies
1.5k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 5.9 years ago by
Julie Zhu
★ 4.3k • written 5.9 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.2k
views
GUIDEseq BED input error
GUIDEseq
5.9 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.3k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
975
views
GUIDEseq outputDir error
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.4k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
929
views
GUIDEseq bam input
GUIDEseq
bam
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.4k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
8.0 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
2.0k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
aamir.mir
• 0
2
votes
1
reply
1.5k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
aamir.mir
• 0
17 results • Page
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Recent ...
Replies
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type
by
Kevin Blighe
★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction
by
Kevin Blighe
★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
Kevin Blighe
★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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