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guideseq
•
reset
3
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651
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 3.2 years ago by
Julie Zhu
★ 4.3k • written 3.2 years ago by
David Kuo
• 0
2
votes
4
replies
1.5k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
aamir.mir
• 0
2
votes
1
reply
1.2k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
aamir.mir
• 0
1
vote
3
replies
826
views
GUIDEseq BED input error
GUIDEseq
4.4 years ago
tomas.rodriguez
▴ 10
0
votes
1
reply
679
views
GUIDEseq outputDir error
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
0
votes
2
replies
880
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
0
votes
4
replies
971
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 4.4 years ago by
Julie Zhu
★ 4.3k • written 4.4 years ago by
tomas.rodriguez
▴ 10
0
votes
2
replies
859
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 3.3 years ago by
Julie Zhu
★ 4.3k • written 3.3 years ago by
Tiffany
• 0
0
votes
0
replies
401
views
GUIDEseq: read count for each offtarget
GUIDEseq
24 months ago
sharvari gujja
▴ 40
0
votes
1
reply
543
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 24 months ago by
Julie Zhu
★ 4.3k • written 24 months ago by
sharvari gujja
▴ 40
0
votes
0
replies
347
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
24 months ago
sharvari gujja
▴ 40
0
votes
0
replies
471
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
2.0 years ago
sharvari gujja
▴ 40
0
votes
6
replies
1.0k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 21 months ago by
Julie Zhu
★ 4.3k • written 21 months ago by
sharvari gujja
▴ 40
0
votes
0
replies
980
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
6.5 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
640
views
GUIDEseq bam input
GUIDEseq
bam
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
955
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 4.7 years ago by
Julie Zhu
★ 4.3k • written 4.7 years ago by
tomas.rodriguez
▴ 10
16 results • Page
1 of 1
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Replies
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
For visualization purposes you can draw an horizontal line at the p-value cutoff that meets the experiment-wide FDR cutoff. For instance, i…
Votes
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
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WouterDeCoster
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Michael Love
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