Bioconductor Hgu133b

Showing : hgu133b • reset

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2.4k

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affy hgu133a hgu133b

updated 9.8 years ago by James W. MacDonald 68k • written 9.8 years ago by giroudpaul ▴ 40

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2.9k

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hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2

updated 9.8 years ago by alexvpickering ▴ 110 • written 13.7 years ago by Voke AO ▴ 760

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hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2

13.7 years ago Mayte Suarez-Farinas ▴ 510

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1.5k

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Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO

updated 17.0 years ago by Marc Carlson ★ 7.2k • written 17.0 years ago by Paul Evans ▴ 180

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Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO

17.0 years ago Paul Evans ▴ 180

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965

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hgu133a hgu133b gcrma hgu133a hgu133b gcrma

19.8 years ago Li, Aiguo NIH/NCI ▴ 110

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1.1k

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Annotation hgu133a hgu133b Annotation hgu133a hgu133b

updated 20.5 years ago by James W. MacDonald 68k • written 20.5 years ago by peter.warren@verizon.net ▴ 40

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hgu133a hgu133b annotate hgu133a hgu133b annotate

updated 21.2 years ago by Adaikalavan Ramasamy ★ 1.8k • written 21.2 years ago by Auer Michael ▴ 250

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hgu133a hgu133b geneplotter hgu133a hgu133b geneplotter

updated 21.5 years ago by rgentleman ★ 5.5k • written 21.5 years ago by raffaele calogero ▴ 500

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2.6k

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hgu133a hgu133b hgu133a hgu133b

updated 22.3 years ago by Crispin Miller ★ 1.1k • written 22.3 years ago by Adaikalavan RAMASAMY ▴ 80

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998

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hgu133a hgu133b hgu133a hgu133b

updated 23.1 years ago by Wolfgang Huber ★ 13k • written 23.1 years ago by Xiao-Jun Ma ▴ 20

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GO hgu133a hgu133b GO hgu133a hgu133b

updated 23.2 years ago by rgentleman ★ 5.5k • written 23.2 years ago by Ken Stickler ▴ 20

12 results • Page 1 of 1

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Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k

There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…

Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0

@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…

Comment: Clarification on counting in Rsubread (featureCounts) by Luca • 0

Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …

Comment: Clarification on counting in Rsubread (featureCounts) by Gordon Smyth 53k

Have you told featureCounts to do strand-specific counting? As pointed out by Frances Turner, you can lose reads if they overlap the gene …

Answer: Clarification on counting in Rsubread (featureCounts) by Frances Turner ▴ 20

You should look at the summary files produced by feature counts. This gives a breakdown of what happened to reads that were not assigned. Y…

Votes

A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi

Answer: Clarification on counting in Rsubread (featureCounts)

Comment: Clarification on counting in Rsubread (featureCounts)

C: ControlGenes/ housekeeping genes Deseq2

Answer: Clarification on counting in Rsubread (featureCounts)

Awards • All

Commentator to James W. MacDonald 68k

Great Question to fl ▴ 20

Popular Question to Lluís Revilla Sancho ▴ 760