Showing : hgug4112a • reset
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Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a hgug4112a
updated 14.6 years ago by ★ 1.3k • written 14.6 years ago by ▴ 390
3
votes
9
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2.4k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
8.3 years ago Konstantinos Yeles ▴ 80
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3
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1.8k
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a hgug4112a
updated 14.6 years ago by ★ 5.5k • written 14.6 years ago by ▴ 390
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votes
2
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972
views
Agilent annotation source
Annotation hgug4112a oligo Annotation hgug4112a oligo
updated 14.3 years ago by 65k • written 14.3 years ago by ★ 1.0k
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2
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9.2k
views
an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO hgug4112a GO hgug4112a
updated 14.6 years ago by 65k • written 14.6 years ago by ▴ 390
0
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2
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1.7k
views
Agilent G4112F with hgug4112a.db?
GO hgug4112a GO hgug4112a
updated 15.5 years ago by ★ 1.3k • written 15.5 years ago by ▴ 190
0
votes
1
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1.2k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 180
0
votes
1
reply
900
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 16.1 years ago by ★ 6.0k • written 16.1 years ago by 21k
0
votes
1
reply
881
views
Problem with createAnnObjs.HUMANCHIP_DB
hgug4112a RmiR hgug4112a RmiR
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 10
0
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1
reply
1.2k
views
Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a Agi4x44PreProcess hgug4112a Agi4x44PreProcess
updated 13.8 years ago by ▴ 460 • written 13.8 years ago by ▴ 20
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1
reply
818
views
How to create annotation package for not a supported organism
Annotation GO Organism hgug4112a Annotation GO Organism hgug4112a
updated 12.7 years ago by ★ 6.8k • written 12.7 years ago by ▴ 90
0
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1
reply
924
views
hgug4845a.db - error in the lookUp function when running genes.rpt.agi
Annotation hgug4112a Annotation hgug4112a
updated 10.6 years ago by 65k • written 10.6 years ago by ▴ 10
0
votes
1
reply
931
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 600
0
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0
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views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a probe limma Agi4x44PreProcess hgug4112a probe limma Agi4x44PreProcess
14.4 years ago Pedro Lopez-Romero ▴ 120
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833
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
14.8 years ago Massimo Pinto ▴ 390
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0
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1.2k
views
GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
15.4 years ago Paul Evans ▴ 180
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0
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832
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation hgug4112a Annotation hgug4112a
14.5 years ago Massimo Pinto ▴ 390
0
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0
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1.4k
views
on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO hgug4112a probe GO hgug4112a probe
14.5 years ago Massimo Pinto ▴ 390
0
votes
0
replies
1000
views
FW: normalization one color microarrays
Normalization hgug4112a PROcess Agi4x44PreProcess Normalization hgug4112a PROcess
12.7 years ago Paz Tapia Ramirez ▴ 150
0
votes
0
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879
views
Questions on the package "RmiR"
miRNA hgug4112a RmiR miRNA hgug4112a RmiR
14.3 years ago jason0701 ▴ 190
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votes
0
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1.1k
views
Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
12.0 years ago Yoo, Seungyeul ▴ 110
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0
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1.3k
views
Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
11.1 years ago Daniel Emden ▴ 10
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0
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8.9k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
9.9 years ago Guest User ★ 13k
0
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0
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1.1k
views
virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
9.7 years ago Guest User ★ 13k
24 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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