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hicdcplus
•
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3
votes
7
replies
2.2k
views
Which version of R to use for "HiCDCPlus" "HiC-DC+"
HiC-DC+
HiCDCPlus
BiocParallel
updated 3.2 years ago by
koushik
• 0 • written 3.5 years ago by
Tay
▴ 10
0
votes
2
replies
292
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 5 months ago by
IsMM
• 0
0
votes
3
replies
836
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 24 months ago by
merve.sahn
• 0 • written 3.5 years ago by
mtS
• 0
0
votes
1
reply
793
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus
BSgenome.Hsapiens.UCSC.hg38
updated 10 months ago by
merve.sahn
• 0 • written 17 months ago by
Yue
• 0
0
votes
1
reply
457
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 17 months ago by
Yue
• 0
0
votes
2
replies
1.1k
views
HicDCplus error, R_Reprotect: only 4 protected items, can't reprotect index -1 (from gi_list_write)
hicd
HiCDCPlus
updated 13 months ago by
Michelle
• 0 • written 2.4 years ago by
franceschini.gianmarco
• 0
0
votes
1
reply
402
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 13 months ago by
mlin18
• 0
0
votes
1
reply
630
views
HiC-DC+ Distance / Model Fitting error when running HiCDCPlus()
HiC-DC+
HiCDCPlus
updated 24 months ago by
merve.sahn
• 0 • written 2.7 years ago by
Hannah
• 0
0
votes
2
replies
659
views
Could I use HiCDCPlus in plant genome?
HiC-DC+
HiCDCPlus
updated 21 months ago by
scott
• 0 • written 2.1 years ago by
1037144675
• 0
0
votes
1
reply
447
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 10 months ago by
merve.sahn
• 0 • written 11 months ago by
ehamrud
• 0
0
votes
0
replies
121
views
HiCDCPlus differential interaction error
HiCDCPlus
3 months ago
Irene
• 0
0
votes
1
reply
753
views
HiCDCPlus with NO replicates
hicdcdiff
HiCDCPlus
updated 24 months ago by
merve.sahn
• 0 • written 2.3 years ago by
ta_awwad
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
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