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grid.chromosome in quantsmooth, without cytobands?
idiogram idiogram
14.1 years ago Paul Shannon ★ 1.1k
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ploting paired-end reads using GenomeGraphs
idiogram GenomeGraphs idiogram GenomeGraphs
updated 14.9 years ago by ★ 6.5k • written 14.9 years ago by ▴ 160
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How to plot gene on their chromosome?
Annotation Cancer geneplotter idiogram rtracklayer Annotation Cancer geneplotter idiogram
15.5 years ago Martin Morgan 25k
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FW: How to plot microRNA chromosome location
Organism idiogram Organism idiogram
16.0 years ago Dykema, Karl ▴ 90
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karyogram
idiogram GenomeGraphs idiogram GenomeGraphs
updated 16.4 years ago by ▴ 550 • written 16.4 years ago by ▴ 60
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Comment: [How to construct a model.matrix ] by kyj2226 • 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
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Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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