Bioconductor Idiogram

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idiogram idiogram

14.4 years ago Paul Shannon ★ 1.1k

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idiogram GenomeGraphs idiogram GenomeGraphs

updated 15.3 years ago by Kasper Daniel Hansen ★ 6.5k • written 15.3 years ago by Ramzi TEMANNI ▴ 160

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Annotation Cancer geneplotter idiogram rtracklayer Annotation Cancer geneplotter idiogram

15.8 years ago Martin Morgan 25k

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Organism idiogram Organism idiogram

16.4 years ago Dykema, Karl ▴ 90

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idiogram GenomeGraphs idiogram GenomeGraphs

updated 16.8 years ago by Oosting, J. PATH ▴ 550 • written 16.8 years ago by Michael Gormley ▴ 60

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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