Bioconductor Intensity

Showing : intensity • reset

3

votes

2

replies

1.4k

views

MSnbase chromatograms intensity

updated 6.2 years ago by Laurent Gatto 1.6k • written 6.2 years ago by djshipman2011 ▴ 10

0

votes

4

replies

2.0k

views

xcms xcmsset intensity

7.1 years ago cpataki • 0

2

votes

2

replies

1.4k

views

affy exprs intensity

updated 7.4 years ago by James W. MacDonald 68k • written 7.4 years ago by elmira.amiri • 0

0

votes

1

reply

1.1k

views

affy intensity probes

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by m_punisher6 • 0

4 results • Page 1 of 1

Recent ...

Replies

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

Awards • All