Bioconductor Intensity

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MSnbase chromatograms intensity

updated 4.1 years ago by Laurent Gatto 1.6k • written 4.1 years ago by djshipman2011 ▴ 10

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xcms xcmsset intensity

5.0 years ago cpataki • 0

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affy exprs intensity

updated 5.3 years ago by James W. MacDonald 63k • written 5.3 years ago by elmira.amiri • 0

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affy intensity probes

updated 7.1 years ago by James W. MacDonald 63k • written 7.1 years ago by m_punisher6 • 0

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Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Comment: Doubts regarding Pathview by loyedbend2811 • 0

I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …

Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0

Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs

Votes

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

Answer: Differential expression analysis with only FPKM matrix available from total newb

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