Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
MSnbase
•
reset
0
votes
0
replies
99
views
News:
Online course: Mass Spectrometry and Proteomics with R/Bioconductor
MSnbase
25 days ago
info
▴ 10
0
votes
0
replies
360
views
Problem with "too large halfWindowSize" with writeMSdata after centroiding MSe data
MSnbase
13 months ago
christine.wegler
• 0
0
votes
2
replies
962
views
Error loading package MSnbase on MacOS
MSnbase
updated 16 months ago by
Laurent Gatto
1.6k • written 16 months ago by
Vinicius
• 0
0
votes
3
replies
968
views
TMT 10 plex impurity corrections
MSnbase
updated 2.0 years ago by
Laurent Gatto
1.6k • written 2.0 years ago by
Akul Mehta
• 0
0
votes
7
replies
3.3k
views
LFQ shiny app from DEP package reports: Error: 'imputeMethods' is not an exported object from 'namespace:MSnbase'
MSnbase
MsCoreUtils
DEP
updated 19 months ago by
Malcolm Cook
★ 1.6k • written 2.1 years ago by
Tobias
▴ 40
0
votes
1
reply
1.4k
views
Installation problem
MSnbase
updated 2.3 years ago by
Laurent Gatto
1.6k • written 2.3 years ago by
Qing
• 0
0
votes
1
reply
693
views
Problem in ion intensity
MSnbase
updated 2.3 years ago by
Laurent Gatto
1.6k • written 2.3 years ago by
imartins
• 0
0
votes
1
reply
817
views
possible problem with mzR? cannot load Msnset for proteomics analysis
MSnbase
mzR
Bioconductor
limma
updated 3.0 years ago by
Laurent Gatto
1.6k • written 3.0 years ago by
yaare
• 0
0
votes
0
replies
621
views
Which package I can use?
MSnbase
DAPAR
DEP
3.4 years ago
yueli7
▴ 20
1
vote
1
reply
801
views
Missing SCANS in writeMgfData
MSnbase
updated 3.4 years ago by
Laurent Gatto
1.6k • written 3.4 years ago by
Pedro Baldoni
▴ 40
0
votes
4
replies
1.4k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error
xcms
MSnbase
updated 3.6 years ago by
Laurent Gatto
1.6k • written 3.6 years ago by
kramerl
• 0
3
votes
2
replies
725
views
readMSData and netCDF files, only TIC intensity available
MSnbase
netCDF
3.8 years ago
julien.kermorvant
▴ 30
8
votes
7
replies
2.0k
views
readMSData and netCDF files, how to set polarity ?
MSnbase
updated 3.8 years ago by
Johannes Rainer
★ 2.0k • written 3.8 years ago by
julien.kermorvant
▴ 30
2
votes
1
reply
919
views
Maximum parsimony protein assembly/inference
rforproteomics
proteomics
msnid
msnbase
4.0 years ago
daniel.magnus.bader
▴ 40
3
votes
4
replies
880
views
Ion Mass to Charge Search R Function with MSnbase, Data frame as mass to charge input help
MSnbase
plyr
updated 4.2 years ago by
Laurent Gatto
1.6k • written 4.2 years ago by
djshipman2011
▴ 10
0
votes
5
replies
1.2k
views
runInfo returns startTimeStamp -infinity
lcms
mzR
metabolomics
xcms
MSnbase
updated 4.6 years ago by
Laurent Gatto
1.6k • written 4.6 years ago by
pol.soladelossantos
• 0
0
votes
8
replies
3.1k
views
Getting data into (and out of) the MSnSet object
proteomics
MSnbase
MSnSet
readMSnSet
msmsTests
updated 4.6 years ago by
sutturka
• 0 • written 6.2 years ago by
moldach
▴ 20
4
votes
4
replies
1.1k
views
Extracting Data from MSn experiment data ("OnDiskMSnExp")
MSnbase
updated 4.7 years ago by
Laurent Gatto
1.6k • written 4.7 years ago by
jamesrgraham
▴ 20
3
votes
2
replies
861
views
Access list of rtime/intensity values from chromatograms object from MSnbase
MSnbase
chromatograms
intensity
updated 4.7 years ago by
Laurent Gatto
1.6k • written 4.7 years ago by
djshipman2011
▴ 10
0
votes
5
replies
1.1k
views
MSnbase addIdentificationData problem
software error
MSnbase
updated 4.8 years ago by
Laurent Gatto
1.6k • written 4.8 years ago by
jd690764
• 0
2
votes
3
replies
822
views
MSnbase extracting individual spectrum based on precursor ion m/z
MSnbase
updated 4.8 years ago by
Laurent Gatto
1.6k • written 4.8 years ago by
garfield320
▴ 30
0
votes
4
replies
2.8k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase
xcms
pheatmap
5.0 years ago
lmg
• 0
0
votes
6
replies
1.7k
views
Protein quantification by MSnbase package
msnbase
rforproteomics
5.1 years ago
fgol
▴ 10
4
votes
5
replies
1.9k
views
How to convert a xlsx data file to MSnSet format?
msnbase
msmstests
proteomics
lc-ms/ms
msnID
updated 5.1 years ago by
Laurent Gatto
1.6k • written 5.1 years ago by
fgol
▴ 10
0
votes
5
replies
1.8k
views
MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repository by pxget function
MSnbase
Bioconductor
PRIDE
rpx
PXDataset
updated 22 months ago by
Laurent Gatto
1.6k • written 5.2 years ago by
fgol
▴ 10
0
votes
4
replies
1.1k
views
MSnset combine error message
MSnbase
5.2 years ago
kamal.fartiyal84
▴ 10
0
votes
5
replies
3.6k
views
Errors installing RforProteomics and MSnbase packages
RforProteomics
MSnbase
updated 5.2 years ago by
Laurent Gatto
1.6k • written 5.2 years ago by
fgol
▴ 10
3
votes
2
replies
1.1k
views
MSnbase annotate m/z values on mass spectrum plots
msnbase
updated 5.3 years ago by
Laurent Gatto
1.6k • written 5.3 years ago by
garfield320
▴ 30
1
vote
2
replies
902
views
quantify() method for MSnExp to MSnSet for MS1 level data only
msnbase
spectrum
updated 5.5 years ago by
Laurent Gatto
1.6k • written 5.5 years ago by
dgemoets
• 0
3
votes
1
reply
919
views
Does OnDiskMSnExp rewrite original data
xcms
msnbase
ondiskmsnexp
updated 5.6 years ago by
Laurent Gatto
1.6k • written 5.6 years ago by
goh
• 0
1
vote
2
replies
1.3k
views
Label free quantification post FDR calculation for MS/MS Proteomics
mzid
msnbase
mzr
updated 5.9 years ago by
Laurent Gatto
1.6k • written 5.9 years ago by
jspmccain
▴ 10
0
votes
2
replies
1.0k
views
How to manipulate assayData in MSnSetList
msnbase
6.0 years ago
kamal.fartiyal84
▴ 10
2
votes
4
replies
1.4k
views
calling combineFeatures twice causes duplicate row.names
msnbase
duplicate
rforproteomics
updated 6.2 years ago by
Laurent Gatto
1.6k • written 6.2 years ago by
joris.vanhoutven
▴ 10
0
votes
6
replies
1.9k
views
Combining two MSnSet
msnbase
6.5 years ago • updated 6.2 years ago
kamal.fartiyal84
▴ 10
0
votes
1
reply
892
views
Adding Identification Data to MSnbase MSn Experiment
MSnbase
6.5 years ago
lau1
• 0
0
votes
4
replies
1.9k
views
Missing value imputation
msnbase
6.7 years ago
kamal.fartiyal84
▴ 10
0
votes
14
replies
2.4k
views
Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to build the Proteins database
pbase
MsnId
mzid
msnbase
updated 8.1 years ago by
Sebastian Gibb
▴ 80 • written 8.1 years ago by
viswanathan.raghuram
• 0
0
votes
2
replies
4.4k
views
Error: package or namespace load failed for ‘MSnbase’
MSnbase
updated 8.1 years ago by
Laurent Gatto
1.6k • written 8.1 years ago by
Marie
• 0
4
votes
15
replies
3.0k
views
Converting Synapter object output into a MSnbase-compatible object
synapter
msnbase
8.6 years ago • updated 8.5 years ago
diana.schreier
• 0
1
vote
9
replies
2.4k
views
msnbase error when adding identification data
msnbase
proteomics
itraq
updated 9.2 years ago by
Laurent Gatto
1.6k • written 9.2 years ago by
queso012
• 0
40 results • Page
1 of 1
Recent ...
Replies
Comment: Minfi - estimatecellscount
by
clacarion
• 0
Thank you for your response, that's what i was thinking I will try with the rgset only and come back to tell you what's happening ! Best…
Answer: Minfi - estimatecellscount
by
James W. MacDonald
65k
Don't filter first. You are likely removing the CpGs that are used to estimate the cell counts.
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Awards
• All
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Ankit
▴ 20
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Locations
• All
United States,
just now
Austria,
3 minutes ago
United States,
5 minutes ago
France,
12 minutes ago
Italy,
12 minutes ago
Traffic: 851 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6