Biostar Ioniser

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ioniser bioinformatics minion

updated 4.4 years ago by Lescai, Francesco ▴ 380 • written 4.8 years ago by nathaniellegall • 0

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ioniser

updated 4.9 years ago by Mike Smith ★ 5.3k • written 4.9 years ago by ferrato • 0

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ioniser

4.9 years ago ferrato • 0

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IONiseR

updated 4.9 years ago by Mike Smith ★ 5.3k • written 4.9 years ago by artemd • 0

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IONiseR Minion

updated 5.0 years ago by Mike Smith ★ 5.3k • written 5.1 years ago by christophe.klopp • 0

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ioniser software error bioconductor

5.3 years ago mv340788 • 0

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IONiseR

updated 5.4 years ago by Mike Smith ★ 5.3k • written 5.4 years ago by kaganr • 0

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Comment: Gviz and datatracks by Malcolm Cook ★ 1.5k

what is the value of bgFile? It probably does not have an extension the DataTrack recognizes....

Answer: Large DE LogFC range by Michael Love 35k

Agree with ATpoint, look at the genes with large LFC (from lfcShrink) using `plotCounts`. Usually large MLE LFC are from all 0's in one gro…

Comment: Large DE LogFC range by ATpoint ▴ 970

You could at least show some counts of the genes with large FCs. Also the PCA would help.

Comment: Weird output of DESeq2 when using single sample from one group agains the other by Michael Love 35k

See the 2014 paper, the MLE LFC is found via IRLS: "We use the standard iteratively reweighted least-squares algorithm [12] for each gene’…

Comment: Weird output of DESeq2 when using single sample from one group agains the other by FantasticAI • 0

Thank you for the help. Sorry for keep asking silly questions: I wonder given 2 groups (A and B), and each group has 6 samples, how does th…

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Where can I find EnsDb.Hsapiens.v105?

Two-way interaction, linear redundancy

Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data

Answer: Joint disperstion estimation for DEXSeq and DESeq2

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Popular Question to Malcolm Cook ★ 1.5k