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1
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190
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incomplete imputation of missing values with LEA impute() function
Bioconductor LEA
4 weeks ago • updated 29 days ago nadia • 0
1
vote
3
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4.2k
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Unable to install any Bioconductor package with new R 4.4.1 - path nor writable - PLEASE HELP
pathnotwritable BiocManager LEA
updated 12 months ago by 68k • written 12 months ago by ▴ 10
0
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0
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940
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LEA get Q-matrix from best snmf() run
LEA
3.5 years ago janis • 0
0
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0
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916
views
LEA package (3.6.0): tracy-widom test problems
tracy-widom PCA LEA
3.6 years ago Bruna • 0
0
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0
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859
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Zeros in p values in snmf analysis from LEA packge
LEA snmf
3.8 years ago Hanan • 0
0
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4
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3.6k
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internal error in trio library when trying to use lfmm() in LEA package
lfmm LEA
updated 8 months ago by • 0 • written 4.5 years ago by • 0
0
votes
1
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2.4k
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R aborts when attempting to use snmf function in LEA package
snmf lea
updated 8.3 years ago by • 0 • written 8.3 years ago by • 0
0
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2
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3.1k
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LEA won't run lfmm sequentially and independently on individual environmental variables when d set to 0
LEA Tutorial lfmm
updated 7 weeks ago by 43k • written 8.4 years ago by • 0
8 results • Page 1 of 1
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Replies
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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