Showing : lea • reset
1
vote
2
replies
449
views
incomplete imputation of missing values with LEA impute() function
Bioconductor LEA
updated 9 weeks ago by ★ 4.0k • written 3 months ago by • 0
1
vote
3
replies
5.4k
views
Unable to install any Bioconductor package with new R 4.4.1 - path nor writable - PLEASE HELP
pathnotwritable BiocManager LEA
updated 15 months ago by 68k • written 15 months ago by ▴ 10
0
votes
0
replies
1.0k
views
LEA get Q-matrix from best snmf() run
LEA
3.7 years ago janis • 0
0
votes
0
replies
971
views
LEA package (3.6.0): tracy-widom test problems
tracy-widom PCA LEA
3.9 years ago Bruna • 0
0
votes
0
replies
912
views
Zeros in p values in snmf analysis from LEA packge
LEA snmf
4.0 years ago Hanan ▴ 10
0
votes
4
replies
3.8k
views
internal error in trio library when trying to use lfmm() in LEA package
lfmm LEA
updated 11 months ago by • 0 • written 4.7 years ago by • 0
0
votes
1
reply
2.5k
views
R aborts when attempting to use snmf function in LEA package
snmf lea
updated 8.6 years ago by • 0 • written 8.6 years ago by • 0
0
votes
2
replies
3.2k
views
LEA won't run lfmm sequentially and independently on individual environmental variables when d set to 0
LEA Tutorial lfmm
updated 4 months ago by 43k • written 8.7 years ago by • 0
8 results • Page 1 of 1
Recent ...
Replies
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Awards • All
Popular Question to Stephanie M. Gogarten ▴ 890
Autobiographer to Frances Turner ▴ 20
Popular Question to maltethodberg ▴ 180
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
The city by the bay, 14 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Melbourne, Australia, 2 hours ago
United States, 2 hours ago
United States, 4 hours ago
Traffic: 1017 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6