Showing : lea • reset
1
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2
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388
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incomplete imputation of missing values with LEA impute() function
Bioconductor LEA
updated 5 weeks ago by ★ 4.0k • written 11 weeks ago by • 0
1
vote
3
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4.6k
views
Unable to install any Bioconductor package with new R 4.4.1 - path nor writable - PLEASE HELP
pathnotwritable BiocManager LEA
updated 14 months ago by 68k • written 14 months ago by ▴ 10
0
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0
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995
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LEA get Q-matrix from best snmf() run
LEA
3.6 years ago janis • 0
0
votes
0
replies
957
views
LEA package (3.6.0): tracy-widom test problems
tracy-widom PCA LEA
3.8 years ago Bruna • 0
0
votes
0
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901
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Zeros in p values in snmf analysis from LEA packge
LEA snmf
3.9 years ago Hanan • 0
0
votes
4
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3.7k
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internal error in trio library when trying to use lfmm() in LEA package
lfmm LEA
updated 10 months ago by • 0 • written 4.6 years ago by • 0
0
votes
1
reply
2.5k
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R aborts when attempting to use snmf function in LEA package
snmf lea
updated 8.5 years ago by • 0 • written 8.5 years ago by • 0
0
votes
2
replies
3.2k
views
LEA won't run lfmm sequentially and independently on individual environmental variables when d set to 0
LEA Tutorial lfmm
updated 3 months ago by 43k • written 8.6 years ago by • 0
8 results • Page 1 of 1
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Replies
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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