Bioconductor Lea

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Bioconductor LEA

9 days ago • updated 8 days ago nadia • 0

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4.1k

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pathnotwritable BiocManager LEA

updated 12 months ago by James W. MacDonald 68k • written 12 months ago by gabry.scata ▴ 10

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913

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LEA

3.4 years ago janis • 0

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899

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tracy-widom PCA LEA

3.6 years ago Bruna • 0

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838

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LEA snmf

3.8 years ago • updated 3.7 years ago Hanan • 0

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3.6k

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lfmm LEA

updated 8 months ago by PW • 0 • written 4.4 years ago by valentinarov • 0

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2.3k

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snmf lea

updated 8.3 years ago by olivier.francois • 0 • written 8.3 years ago by renee.catullo • 0

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3.1k

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LEA Tutorial lfmm

updated 4 weeks ago by Michael Love 43k • written 8.4 years ago by afreedman405 • 0

8 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

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Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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