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lme4
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6
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4.6k
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limma vs lme4: definition of "random effects"
limma
lme4
mixed
3.0 years ago
leandro
• 0
3
votes
8
replies
2.4k
views
Results from variancePartition not matching those from lme4
variancepartition
lme4
mixedmodel
updated 6.0 years ago by
gabriel.hoffman
▴ 170 • written 6.1 years ago by
c.taylor
• 0
4
votes
2
replies
1.3k
views
Two-way interaction, linear redundancy
limma
caret
lm
lmer
lme4
updated 6.2 years ago by
Aaron Lun
★ 29k • written 6.2 years ago by
Sindre
▴ 110
0
votes
5
replies
1.3k
views
selecting the right package for complex designs
limma
edger
lme4
updated 8.7 years ago by
Aaron Lun
★ 29k • written 8.7 years ago by
bensimon.ariel
• 0
12
votes
2
replies
4.1k
views
How does edgeR compare to lme4?
rna-seq
edger
mixed model
random effects
lme4
updated 9.3 years ago by
Gordon Smyth
53k • written 9.3 years ago by
Ekarl2
▴ 80
0
votes
6
replies
3.9k
views
Analyzing pre/post (longitudinal) data using limma/lme4 with adjustment for continuous covariates
illumina450k
limma
lme4
lmer
updated 9.5 years ago by
Aaron Lun
★ 29k • written 9.5 years ago by
DSP
• 0
6 results • Page
1 of 1
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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