Bioconductor Lme4

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4.6k

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limma lme4 mixed

3.0 years ago leandro • 0

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2.4k

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variancepartition lme4 mixedmodel

updated 6.0 years ago by gabriel.hoffman ▴ 170 • written 6.1 years ago by c.taylor • 0

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1.3k

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limma caret lm lmer lme4

updated 6.2 years ago by Aaron Lun ★ 29k • written 6.2 years ago by Sindre ▴ 110

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1.3k

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limma edger lme4

updated 8.7 years ago by Aaron Lun ★ 29k • written 8.7 years ago by bensimon.ariel • 0

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4.1k

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rna-seq edger mixed model random effects lme4

updated 9.3 years ago by Gordon Smyth 53k • written 9.3 years ago by Ekarl2 ▴ 80

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3.9k

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illumina450k limma lme4 lmer

updated 9.5 years ago by Aaron Lun ★ 29k • written 9.5 years ago by DSP • 0

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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