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maanova
•
reset
0
votes
5
replies
5.4k
views
Statistical power of limma vs mixed model approach to analyze microarray and differentialproteomics/peptidomics experiments and Poisson/binomial mixe…
limma
maanova
rnaseq
12.4 years ago • updated 3.9 years ago
Gordon Smyth
53k
0
votes
0
replies
1.0k
views
multicore version of maanova
maanova
maanova
12.1 years ago
Guest User
★ 13k
0
votes
0
replies
2.0k
views
R / Maanova: contrasts for interaction in model with 2 fixed factors
maanova
maanova
13.5 years ago
V. Oostra
▴ 30
0
votes
0
replies
949
views
Cross-comparison of independent intensities from different experiments (genepix) (sorry I don\'t know how to describe the problem better)
limma
maanova
limma
maanova
13.8 years ago
James W. MacDonald
68k
0
votes
1
reply
1.7k
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 14.0 years ago by
Nicholas Lewin-Koh
▴ 430 • written 14.0 years ago by
Kurt Hornik
▴ 10
0
votes
0
replies
990
views
R/BioC/Mac keeps going and going
maanova
maanova
15.6 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
1.1k
views
[MAANOVA] Contrasts for interaction levels - possible?
maanova
maanova
15.6 years ago
boczniak767
▴ 740
0
votes
3
replies
1.9k
views
[MAANOVA] Warnings in fitmaanova & information request
maanova
oligo
maanova
oligo
15.7 years ago
boczniak767
▴ 740
0
votes
0
replies
1.2k
views
Loop design - biological, technical replication
limma
maanova
limma
maanova
15.7 years ago
boczniak767
▴ 740
0
votes
0
replies
1.5k
views
manova contrast.matrix
maanova
maanova
15.9 years ago
David
▴ 860
0
votes
0
replies
986
views
To bioinformatics and maanova expert
PROcess
maanova
PROcess
maanova
16.3 years ago
Loren Engrav
★ 1.0k
0
votes
0
replies
1.1k
views
Ignore maanova warning messages?
maanova
maanova
16.3 years ago
Loren Engrav
★ 1.0k
0
votes
3
replies
1.3k
views
Warning serious?
maanova
maanova
updated 16.3 years ago by
Juan Pedro Steibel
▴ 130 • written 16.3 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
1.0k
views
What does maanova contrast?
maanova
maanova
16.3 years ago
Loren Engrav
★ 1.0k
0
votes
2
replies
1.2k
views
Filter before? Filter after? With maanova
Regression
probe
maanova
Regression
probe
maanova
updated 16.3 years ago by
rgentleman
★ 5.5k • written 16.3 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
991
views
Commands with maanova
Regression
maanova
Regression
maanova
16.3 years ago
Loren Engrav
★ 1.0k
0
votes
2
replies
3.2k
views
Random effects and variance components (was: Yet another nested design in limma)
affy
limma
siggenes
factDesign
maanova
affy
limma
siggenes
factDesign
maanova
updated 16.4 years ago by
James W. MacDonald
68k • written 16.4 years ago by
Paolo Innocenti
▴ 320
0
votes
2
replies
3.1k
views
Yet another nested design in limma
affy
limma
siggenes
factDesign
maanova
affy
limma
siggenes
factDesign
maanova
updated 16.5 years ago by
Paolo Innocenti
▴ 320 • written 16.5 years ago by
Gordon Smyth
53k
0
votes
0
replies
1.3k
views
Yet another nested design in limma
affy
limma
siggenes
factDesign
maanova
affy
limma
siggenes
factDesign
maanova
16.5 years ago
Paolo Innocenti
▴ 320
0
votes
1
reply
1.3k
views
No degree of freedom in maanova
maanova
maanova
16.7 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.1k
views
error with get(getOption("device")) in maanova with R 2.8.0
GO
maanova
GO
maanova
17.0 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.5k
views
error with get(getOption("device")) in maanova with R 2.8.0
Kidney
maanova
Kidney
maanova
updated 17.0 years ago by
Wolfgang Huber
★ 13k • written 17.0 years ago by
Rob Tempelman
▴ 20
0
votes
2
replies
1.3k
views
Does old workspace work?
Regression
probe
gcrma
PROcess
maanova
Regression
probe
gcrma
PROcess
maanova
updated 17.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 17.0 years ago by
Loren Engrav
★ 1.0k
0
votes
2
replies
1.4k
views
Maanova & createdata
Regression
maanova
Regression
maanova
updated 17.0 years ago by
Marcelo Laia
▴ 450 • written 17.0 years ago by
Loren Engrav
★ 1.0k
0
votes
0
replies
1.2k
views
F tests of covariates in maanova
maanova
maanova
17.2 years ago
Kristen K Dang
▴ 50
0
votes
2
replies
1.7k
views
GO over representation analysis
Annotation
Pathways
GO
Organism
db0
AnnBuilder
PROcess
maanova
AnnotationDbi
Annotation
updated 17.2 years ago by
Kort, Eric
▴ 220 • written 17.2 years ago by
Marc Carlson
★ 7.2k
0
votes
9
replies
2.2k
views
GO over representation analysis
Annotation
GO
maanova
Annotation
GO
maanova
updated 17.2 years ago by
Marc Carlson
★ 7.2k • written 17.2 years ago by
Heike Pospisil
▴ 310
0
votes
1
reply
1.1k
views
How to extract log ratios from two color arrays
GO
hgu133a
maanova
GO
hgu133a
maanova
17.2 years ago
Heike Pospisil
▴ 310
0
votes
0
replies
1.0k
views
Microarray analysis question
Microarray
Normalization
affy
limma
convert
maanova
Microarray
Normalization
affy
limma
17.4 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
1.2k
views
MAANOVA - how to collapse replicate spots
Genetics
maanova
Genetics
maanova
updated 17.5 years ago by
Marcelo Laia
▴ 450 • written 17.5 years ago by
Cecilia McGregor
▴ 110
0
votes
0
replies
1.1k
views
[SOLVED] Factorial experiment: No degree of freedom in maanova
maanova
maanova
17.7 years ago
Marcelo Laia
▴ 450
0
votes
3
replies
1.4k
views
Factorial experiment: No degree of freedom in maanova
maanova
maanova
updated 17.7 years ago by
Marcelo Laia
▴ 450 • written 17.7 years ago by
Naomi Altman
★ 6.0k
0
votes
0
replies
956
views
Factorial experiment: No degree of freedom in maanova
maanova
maanova
17.7 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.0k
views
2 conditions time series with different number of sample at each time point
TimeCourse
limma
timecourse
maanova
TimeCourse
limma
timecourse
maanova
17.8 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
1.3k
views
error in maanova matest() with affymetrix
cdf
affy
maanova
affyio
cdf
affy
maanova
affyio
updated 18.2 years ago by
James W. MacDonald
68k • written 18.2 years ago by
Georg Otto
▴ 510
0
votes
1
reply
1.2k
views
Needed help on maanova fitmaanova function
affy
vsn
limma
maanova
affyio
affy
vsn
limma
maanova
affyio
18.3 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
830
views
MAANOVA help
maanova
maanova
18.3 years ago
Alessandro Fazio
▴ 70
0
votes
1
reply
1.1k
views
Options for spatial normalization?
Normalization
maanova
Normalization
maanova
updated 18.7 years ago by
Jay Konieczka
▴ 80 • written 18.7 years ago by
Oliver R. Homann
▴ 30
0
votes
0
replies
1.3k
views
limma vs. maanova for expirement with both contrasts and continuous variables
limma
maanova
BAC
limma
maanova
BAC
18.8 years ago
Gordon Smyth
53k
0
votes
0
replies
973
views
maanova: missing observations in cov/cor
maanova
maanova
19.2 years ago
Matthew Vaughn
▴ 30
0
votes
4
replies
1.7k
views
valcano plot x-values
maanova
maanova
updated 19.6 years ago by
James W. MacDonald
68k • written 19.6 years ago by
sabrina.shao
▴ 220
1
vote
1
reply
1.9k
views
adjPval and qvalue
qvalue
maanova
qvalue
maanova
updated 19.6 years ago by
James W. MacDonald
68k • written 19.6 years ago by
sabrina.shao
▴ 220
0
votes
1
reply
1.1k
views
diagnostics
Genetics
limma
maanova
Genetics
limma
maanova
19.8 years ago
alex lam RI
▴ 310
0
votes
0
replies
1.5k
views
affymetrix in maanova, code
qvalue
maanova
qvalue
maanova
19.9 years ago
Morten
▴ 300
0
votes
4
replies
1.4k
views
Using MAANOVA functions
Microarray
maanova
Microarray
maanova
updated 19.9 years ago by
Xiangqin Cui
▴ 20 • written 19.9 years ago by
Heather Maughan
▴ 10
0
votes
0
replies
1.3k
views
R/maanova
Microarray
affy
limma
maanova
Microarray
affy
limma
maanova
19.9 years ago
Gary Churchill
▴ 10
0
votes
3
replies
1.8k
views
Limma vs Maanova, and use of covariates
limma
maanova
limma
maanova
19.9 years ago
Ingunn Berget
▴ 150
0
votes
1
reply
1.5k
views
limma(B) and maanova(La.svd) questions
limma
maanova
limma
maanova
20.1 years ago
Aurélie Laugraud
▴ 20
0
votes
0
replies
923
views
maanova error
maanova
maanova
20.1 years ago
Georg Otto
▴ 510
0
votes
0
replies
948
views
limma_design_matrix.
maanova
maanova
21.4 years ago
Gordon Smyth
53k
55 results • Page
1 of 2
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Answer: Integration: Paired-end vs healthy single-end from a different source
by
wba64023
• 0
Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…
Comment: Could we detect difference at pathway level but not significant different at gen
by
wba64023
• 0
thanks for sharing! [slope 2][1] [1]: https://slope2.online
Comment: After running samtools, the featureCounts command crashed.
by
eja.gssssse.r.m
• 0
The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type
by
eja.gssssse.r.m
• 0
It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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