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makeorgpackage
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Error in using makeOrgPackage-
makeOrgPackage
18 months ago
Qiang
• 0
4
votes
11
replies
1.5k
views
makeOrgPackage error: Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name.
makeOrgPackage
updated 3.2 years ago by
James W. MacDonald
65k • written 4.0 years ago by
Eduardo Andres-Leon
▴ 30
0
votes
1
reply
1.0k
views
GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim
makeOrgPackage
godata
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
Wojeff
• 0
0
votes
1
reply
1.8k
views
AnnotationForge makeOrgPackage rsqlite_send_query error
annotationforge
makeorgpackage
6.9 years ago
marisa.e.miller
• 0
0
votes
2
replies
1.2k
views
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge
makeorgpackage
go
8.9 years ago
Keith Hughitt
▴ 180
5 results • Page
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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