Bioconductor Matchpattern

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matchPattern automatic Biostrings for-loop

3.6 years ago adklts • 0

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searching siRNA sequence human genome GenomicAlignment Biostrings matchPattern

updated 4.8 years ago by ATpoint ★ 4.5k • written 4.8 years ago by stephen66 ▴ 50

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Biostrings patternmatch biostrings matchpattern

updated 8.8 years ago by Hervé Pagès 16k • written 8.8 years ago by Stefanie Tauber ▴ 40

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bsgenome matchPattern

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by msmithmailbox ▴ 20

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by Haibo Liu • 0

Thank you for your reminder. I did forget that, but I just bumped the version to 1.1.1.

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by shepherl 4.1k

@haibol2017-23658 make sure you have the valid version bump in the description on our git repository in order for the new version to propa…

Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li by giulia.gentile • 0

Thank you very much for your corrections and suggestions. Giulia

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by Haibo Liu • 0

Thank you for using our CleanUpRNAseq package. I just update the code in the package to accomodate a GTF without mitochondrial annotatio…

Answer: UniProt.ws query loading indefinitely by James W. MacDonald 67k

It should be almost instantaneous. Do you have internet access on the local computer? ``` > system.time(up <- UniProt.ws()) user s…

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Answer: UniProt.ws query loading indefinitely

Answer: Package needs internet access

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

Comment: Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178

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Scholar to James W. MacDonald 67k