Bioconductor Matchpattern

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matchPattern automatic Biostrings for-loop

4.7 years ago adklts • 0

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searching siRNA sequence human genome GenomicAlignment Biostrings matchPattern

updated 5.8 years ago by ATpoint ★ 5.0k • written 5.8 years ago by stephen66 ▴ 50

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Biostrings patternmatch biostrings matchpattern

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by Stefanie Tauber ▴ 40

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bsgenome matchPattern

updated 10.5 years ago by Hervé Pagès 16k • written 10.5 years ago by msmithmailbox ▴ 20

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

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