Bioconductor Metabolomics

Showing : metabolomics • reset

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Metabolomics

10 months ago Eddie • 0

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Metabolomics

10 months ago Eddie • 0

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Metabolomics

updated 11 months ago by etienne.thevenot ▴ 40 • written 13 months ago by Eddie • 0

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Metabolomics ropls

updated 5 months ago by etienne.thevenot ▴ 40 • written 5 months ago by ansari.maya022 • 0

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Metabolomics

9 months ago Eddie • 0

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msPurity Metabolomics Bioconductor xcms spectralMatching

updated 4 months ago by thomas.nigel.lawson • 0 • written 7 months ago by hp71727 ▴ 10

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Metabolomics ropls

updated 6 months ago by etienne.thevenot ▴ 40 • written 6 months ago by ansari.maya022 • 0

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Metabolomics

14 months ago • updated 11 months ago Eddie • 0

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limma Metabolomics DifferentialExpression POMA

updated 4 months ago by Gordon Smyth 47k • written 4 months ago by wiscoyogi • 0

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343

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Metabolomics

updated 11 months ago by etienne.thevenot ▴ 40 • written 11 months ago by Eddie • 0

10 results • Page 1 of 1

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Comment: Error: biomaRt has encountered an unexpected server error. by Mike Smith ★ 6.0k

Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…

Comment: Use with_go along with other filters in getBM function by Mike Smith ★ 6.0k

Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

Sure, noted.

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …

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Answer: Dispersion Estimates and MA plots

DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.

WGCNA coupled with differential expression analysis: question about baseline module detection

WGCNA with paired samples

Comment: Question on constructing design matrix and defining contrasts for analysis

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